Gene
| Gene Model ID | pfu_aug2.0_27.1_23259 |
|---|---|
| Locus | scaffold27.1 : 110536 ... 111804 : + |
| To GenomeBrowser | scaffold27.1:110536..111804 |
| Genes list of scaffold | scaffold27.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| transmembrane emp24 domain-containing protein 7 | GO:0043227 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_27.1_23259.t1 | 1 | 1 | EMP24_GP25L | 24 | 239 | 7.8e-29 | 100.6 | 6.2e-32 | 4.6e-28 | 98.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_27.1_23259.t1 | gi|676471514|ref|XP_009059202.1| | hypothetical protein LOTGIDRAFT_192242 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_27.1_23259.t1 | gi|727022811|ref|XP_010399664.1| | PREDICTED: transmembrane emp24 domain-containing protein 7, partial [Corvus cornix cornix] | 4.00001e-40 |
| pfu_aug2.0_27.1_23259.t1 | gi|699677146|ref|XP_009886024.1| | PREDICTED: transmembrane emp24 domain-containing protein 7-like [Charadrius vociferus] | 5.0e-40 |
| pfu_aug2.0_27.1_23259.t1 | gi|543369937|ref|XP_005528194.1| | PREDICTED: transmembrane emp24 domain-containing protein 7 [Pseudopodoces humilis] | 7.0e-40 |
| pfu_aug2.0_27.1_23259.t1 | gi|525028851|ref|XP_005061837.1| | PREDICTED: transmembrane emp24 domain-containing protein 7 [Ficedula albicollis] | 8.99999e-40 |
Transcript
| Transcript ID | pfu_aug2.0_27.1_23259.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_27.1_23259.t1 atgtggtttgtgtgtgtaggattaatcctcgttgtccgtgcggtgtgtgcccacgcagctggaacatcccttatttttga actaccagacaaagaaaaaacttgtttttatcacgaatttaaaggagcaagtgttgggaagagtttcgtgtttgaataca gagtgataaggggaggtaacaacgacattgatgcctgggttgtctcccctaannnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn cggaaaacttctatacaaggagctgaggcttagtgccggtatttttacatttgactcctctagaggtgatttcagattct gttttggaaacgaattttctacctttactcataaagtggtttcttttgatcttcgcaatgaagaagtagccaatttagat gtagaagcaggggttacggtccctaccgtaaaaggggcatcagagacatcatgtgataacatccatactgagatgaccac ggtggttaattatcagagagaattcagacttaaggaggcgttagggcggcaccttgcagagcgcatgaatcaaaacgtct cgtggtggtctattggacagactgttgtcattcttcttactggacttggacaagtcttcattcttaaaacatttttcaca gagaaaagttctacagtgaaagtcgaaacttaa |
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Protein
| Protein ID | pfu_aug2.0_27.1_23259.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_27.1_23259.t1 MWFVCVGLILVVRAVCAHAAGTSLIFELPDKEKTCFYHEFKGASVGKSFVFEYRVIRGGNNDIDAWVVSPXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLYKELRLSAGIFTFDSSRGDFRFCFGNEFSTFTHKVVSFDLRNEEVANLD VEAGVTVPTVKGASETSCDNIHTEMTTVVNYQREFRLKEALGRHLAERMNQNVSWWSIGQTVVILLTGLGQVFILKTFFT EKSSTVKVET |
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