Gene
| Gene Model ID | pfu_aug2.0_27.1_23261 |
|---|---|
| Locus | scaffold27.1 : 117662 ... 122335 : - |
| To GenomeBrowser | scaffold27.1:117662..122335 |
| Genes list of scaffold | scaffold27.1 |
| Synonym | pfu_aug1.0_14142.1_61309 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_27.1_23261.t1 | 4 | 1 | EF-hand_6 | 1 | 28 | 1.9e-24 | 83.2 | 2.4e-09 | 1.8e-06 | 27.3 |
| pfu_aug2.0_27.1_23261.t1 | 4 | 1 | EF-hand_5 | 1 | 25 | 4.0e-21 | 73.3 | 4.9e-09 | 3.6e-06 | 26.0 |
| pfu_aug2.0_27.1_23261.t1 | 2 | 1 | EF-hand_7 | 2 | 62 | 6.1e-29 | 99.9 | 2.1e-15 | 1.6e-12 | 47.3 |
| pfu_aug2.0_27.1_23261.t1 | 4 | 1 | EF-hand_1 | 2 | 28 | 9.1e-28 | 93.4 | 2.6e-09 | 1.9e-06 | 26.7 |
| pfu_aug2.0_27.1_23261.t1 | 4 | 1 | EF-hand_8 | 4 | 27 | 5.5e-20 | 70.7 | 2.0e-05 | 0.015 | 14.8 |
| pfu_aug2.0_27.1_23261.t1 | 2 | 1 | SPARC_Ca_bdg | 5 | 59 | 4.6e-09 | 36.3 | 0.00022 | 0.16 | 11.9 |
| pfu_aug2.0_27.1_23261.t1 | 2 | 1 | EF-hand_9 | 5 | 60 | 2.8e-08 | 33.5 | 6.5e-06 | 0.0048 | 16.7 |
| pfu_aug2.0_27.1_23261.t1 | 4 | 2 | EF-hand_8 | 32 | 64 | 5.5e-20 | 70.7 | 0.024 | 18.0 | 5.0 |
| pfu_aug2.0_27.1_23261.t1 | 4 | 2 | EF-hand_6 | 42 | 64 | 1.9e-24 | 83.2 | 0.00047 | 0.35 | 10.8 |
| pfu_aug2.0_27.1_23261.t1 | 4 | 2 | EF-hand_1 | 50 | 63 | 9.1e-28 | 93.4 | 0.00079 | 0.58 | 9.5 |
| pfu_aug2.0_27.1_23261.t1 | 4 | 3 | EF-hand_8 | 51 | 103 | 5.5e-20 | 70.7 | 3.4e-07 | 0.00025 | 20.5 |
| pfu_aug2.0_27.1_23261.t1 | 4 | 2 | EF-hand_5 | 55 | 59 | 4.0e-21 | 73.3 | 2.2 | 1700.0 | -1.4 |
| pfu_aug2.0_27.1_23261.t1 | 2 | 2 | SPARC_Ca_bdg | 73 | 135 | 4.6e-09 | 36.3 | 1.0e-07 | 7.5e-05 | 22.7 |
| pfu_aug2.0_27.1_23261.t1 | 4 | 3 | EF-hand_1 | 76 | 104 | 9.1e-28 | 93.4 | 7.1e-10 | 5.3e-07 | 28.4 |
| pfu_aug2.0_27.1_23261.t1 | 4 | 3 | EF-hand_6 | 76 | 105 | 1.9e-24 | 83.2 | 8.9e-10 | 6.6e-07 | 28.6 |
| pfu_aug2.0_27.1_23261.t1 | 2 | 2 | EF-hand_7 | 77 | 137 | 6.1e-29 | 99.9 | 8.5e-18 | 6.3e-15 | 55.0 |
| pfu_aug2.0_27.1_23261.t1 | 4 | 3 | EF-hand_5 | 77 | 101 | 4.0e-21 | 73.3 | 6.6e-10 | 4.9e-07 | 28.7 |
| pfu_aug2.0_27.1_23261.t1 | 2 | 2 | EF-hand_9 | 81 | 137 | 2.8e-08 | 33.5 | 2.0e-05 | 0.015 | 15.1 |
| pfu_aug2.0_27.1_23261.t1 | 4 | 4 | EF-hand_8 | 96 | 137 | 5.5e-20 | 70.7 | 8.0e-13 | 5.9e-10 | 38.6 |
| pfu_aug2.0_27.1_23261.t1 | 4 | 4 | EF-hand_1 | 113 | 137 | 9.1e-28 | 93.4 | 8.8e-11 | 6.5e-08 | 31.3 |
| pfu_aug2.0_27.1_23261.t1 | 4 | 4 | EF-hand_5 | 117 | 137 | 4.0e-21 | 73.3 | 3.0e-08 | 2.3e-05 | 23.5 |
| pfu_aug2.0_27.1_23261.t1 | 4 | 4 | EF-hand_6 | 119 | 137 | 1.9e-24 | 83.2 | 2.9e-06 | 0.0022 | 17.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_27.1_23261.t1 | gi|727474410|ref|XP_010412992.1| | PREDICTED: calmodulin-2/4-like, partial [Camelina sativa] | 7.0e-34 |
Transcript
| Transcript ID | pfu_aug2.0_27.1_23261.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_27.1_23261.t1 atgagaaaattttttaacaaaattgataccgatggaaacgggaaacttgatccaaacgagatacgaacccttctacagtc cctgaatcaaaatcccacggaaggtgacgttcaacaacttatagagaattatgacaaaaatgccaaggggaatggcgtca tggaatttgaggagtttgtagattttttggacggttataagaaagatccatgtacgataagaaacgaattaagggacgct tttaaagttctagatcaaaacaaggatggtaaagtaagcgctcttgaattaaagacagtaatgacaatgttaggagaaca gcttacagaggaccaggccaatgaaatgatatcacaagccgataaagacggagatggacaggtggattatgaagaatttg ttaaactaatgtgtccagacgacgagcatgacagtgcccagaaagcggagtaa |
|
Protein
| Protein ID | pfu_aug2.0_27.1_23261.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_27.1_23261.t1 MRKFFNKIDTDGNGKLDPNEIRTLLQSLNQNPTEGDVQQLIENYDKNAKGNGVMEFEEFVDFLDGYKKDPCTIRNELRDA FKVLDQNKDGKVSALELKTVMTMLGEQLTEDQANEMISQADKDGDGQVDYEEFVKLMCPDDEHDSAQKAE |
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