Gene
| Gene Model ID | pfu_aug2.0_27.1_23271 |
|---|---|
| Locus | scaffold27.1 : 304227 ... 307284 : - |
| To GenomeBrowser | scaffold27.1:304227..307284 |
| Genes list of scaffold | scaffold27.1 |
| Synonym | pfu_aug1.0_16615.1_03731 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_27.1_23271.t1 | 1 | 1 | BTB | 24 | 72 | 8.6e-13 | 48.2 | 1.7e-15 | 2.8e-12 | 46.6 |
| pfu_aug2.0_27.1_23271.t1 | 1 | 1 | BACK | 78 | 176 | 4.1e-28 | 97.2 | 4.6e-31 | 7.6e-28 | 96.3 |
| pfu_aug2.0_27.1_23271.t1 | 5 | 1 | Kelch_6 | 225 | 260 | 1.5e-25 | 88.2 | 2.2e-05 | 0.036 | 14.2 |
| pfu_aug2.0_27.1_23271.t1 | 4 | 1 | Kelch_2 | 226 | 257 | 4.9e-18 | 64.1 | 0.00094 | 1.5 | 8.6 |
| pfu_aug2.0_27.1_23271.t1 | 4 | 1 | Kelch_5 | 226 | 239 | 2.9e-06 | 27.0 | 1.2 | 2100.0 | -1.2 |
| pfu_aug2.0_27.1_23271.t1 | 6 | 1 | Kelch_1 | 227 | 260 | 7.6e-33 | 111.8 | 3.7e-07 | 0.00061 | 19.2 |
| pfu_aug2.0_27.1_23271.t1 | 6 | 1 | Kelch_4 | 229 | 238 | 3.9e-17 | 61.7 | 0.64 | 1100.0 | -0.5 |
| pfu_aug2.0_27.1_23271.t1 | 5 | 1 | Kelch_3 | 231 | 260 | 2.0e-17 | 62.8 | 0.0096 | 16.0 | 5.8 |
| pfu_aug2.0_27.1_23271.t1 | 6 | 2 | Kelch_1 | 265 | 306 | 7.6e-33 | 111.8 | 4.9e-08 | 8.1e-05 | 22.0 |
| pfu_aug2.0_27.1_23271.t1 | 5 | 2 | Kelch_6 | 265 | 310 | 1.5e-25 | 88.2 | 4.7e-06 | 0.0078 | 16.3 |
| pfu_aug2.0_27.1_23271.t1 | 4 | 2 | Kelch_2 | 267 | 305 | 4.9e-18 | 64.1 | 0.00014 | 0.23 | 11.2 |
| pfu_aug2.0_27.1_23271.t1 | 6 | 2 | Kelch_4 | 267 | 303 | 3.9e-17 | 61.7 | 4.3e-06 | 0.0071 | 16.0 |
| pfu_aug2.0_27.1_23271.t1 | 4 | 2 | Kelch_5 | 268 | 294 | 2.9e-06 | 27.0 | 0.088 | 150.0 | 2.5 |
| pfu_aug2.0_27.1_23271.t1 | 5 | 2 | Kelch_3 | 273 | 314 | 2.0e-17 | 62.8 | 1.4e-05 | 0.023 | 14.8 |
| pfu_aug2.0_27.1_23271.t1 | 6 | 3 | Kelch_1 | 309 | 355 | 7.6e-33 | 111.8 | 4.9e-09 | 8.1e-06 | 25.2 |
| pfu_aug2.0_27.1_23271.t1 | 5 | 3 | Kelch_6 | 309 | 361 | 1.5e-25 | 88.2 | 8.2e-06 | 0.013 | 15.5 |
| pfu_aug2.0_27.1_23271.t1 | 4 | 3 | Kelch_2 | 309 | 355 | 4.9e-18 | 64.1 | 5.5e-08 | 9.1e-05 | 22.0 |
| pfu_aug2.0_27.1_23271.t1 | 6 | 3 | Kelch_4 | 309 | 359 | 3.9e-17 | 61.7 | 1.8e-08 | 3.0e-05 | 23.6 |
| pfu_aug2.0_27.1_23271.t1 | 4 | 3 | Kelch_5 | 309 | 333 | 2.9e-06 | 27.0 | 8.0e-05 | 0.13 | 12.2 |
| pfu_aug2.0_27.1_23271.t1 | 5 | 3 | Kelch_3 | 319 | 365 | 2.0e-17 | 62.8 | 2.8e-06 | 0.0046 | 17.0 |
| pfu_aug2.0_27.1_23271.t1 | 6 | 4 | Kelch_1 | 362 | 393 | 7.6e-33 | 111.8 | 0.14 | 240.0 | 1.3 |
| pfu_aug2.0_27.1_23271.t1 | 6 | 4 | Kelch_4 | 371 | 397 | 3.9e-17 | 61.7 | 0.042 | 70.0 | 3.3 |
| pfu_aug2.0_27.1_23271.t1 | 5 | 4 | Kelch_6 | 419 | 452 | 1.5e-25 | 88.2 | 0.0065 | 11.0 | 6.4 |
| pfu_aug2.0_27.1_23271.t1 | 6 | 5 | Kelch_1 | 432 | 451 | 7.6e-33 | 111.8 | 0.64 | 1100.0 | -0.7 |
| pfu_aug2.0_27.1_23271.t1 | 5 | 4 | Kelch_3 | 435 | 451 | 2.0e-17 | 62.8 | 0.85 | 1400.0 | -0.4 |
| pfu_aug2.0_27.1_23271.t1 | 6 | 5 | Kelch_4 | 435 | 451 | 3.9e-17 | 61.7 | 0.77 | 1300.0 | -0.8 |
| pfu_aug2.0_27.1_23271.t1 | 5 | 5 | Kelch_6 | 456 | 498 | 1.5e-25 | 88.2 | 7.5e-11 | 1.2e-07 | 31.5 |
| pfu_aug2.0_27.1_23271.t1 | 6 | 6 | Kelch_1 | 458 | 499 | 7.6e-33 | 111.8 | 1.3e-15 | 2.1e-12 | 46.3 |
| pfu_aug2.0_27.1_23271.t1 | 4 | 4 | Kelch_5 | 458 | 487 | 2.9e-06 | 27.0 | 0.0027 | 4.4 | 7.3 |
| pfu_aug2.0_27.1_23271.t1 | 4 | 4 | Kelch_2 | 460 | 493 | 4.9e-18 | 64.1 | 7.4e-07 | 0.0012 | 18.5 |
| pfu_aug2.0_27.1_23271.t1 | 6 | 6 | Kelch_4 | 460 | 495 | 3.9e-17 | 61.7 | 3.5e-06 | 0.0057 | 16.3 |
| pfu_aug2.0_27.1_23271.t1 | 5 | 5 | Kelch_3 | 464 | 506 | 2.0e-17 | 62.8 | 1.5e-06 | 0.0025 | 17.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_27.1_23271.t1 | gi|524890010|ref|XP_005101555.1| | PREDICTED: kelch-like protein diablo-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_27.1_23271.t1 | gi|676463991|ref|XP_009056779.1| | hypothetical protein LOTGIDRAFT_233079 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_27.1_23271.t1 | gi|695148225|ref|XP_009501647.1| | PREDICTED: kelch-like protein 3, partial [Phalacrocorax carbo] | 0.0 |
| pfu_aug2.0_27.1_23271.t1 | gi|731216419|ref|XP_010622588.1| | PREDICTED: kelch-like protein 24 [Fukomys damarensis] | 0.0 |
| pfu_aug2.0_27.1_23271.t1 | gi|704186530|ref|XP_010137289.1| | PREDICTED: kelch-like protein 3 [Buceros rhinoceros silvestris] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_27.1_23271.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_27.1_23271.t1 atggatgctaaggatcgtgaaaaattcatcatagatgatcctgattatggaagggaacttctaagaaatctgaattcctt acgacacagcaatatgttcactgacgctactctgtatatacaacatgaggaactatattgtcacaggaacattctagcag ctagtagtccgtatttccgagcaatgttcacacataacctccgagaagagaagcatctccatccttcaaattgtttagga atagagtatttcactcagatgtatgcttgtgacaagcttatggaaaaggctcataaatatgccttggaaaattttagtgg tgtagtcgaatgtgaagaatttctagaaatgtccattgatcgtttattacagtacttagctagtgattggatagatgttc gaactgaagagacagtatatgacgcagtaatgcagtggatagattatgatatggataaaagaaaggacaatttgtttgat cttctgagtcaagttagacttcctatcatacaaatgaacaatttgaaagtcatggccaaacatccgcttataaggaattg tgaggattgtttgcagctagtcatggaggctcaggaacagcatgaatctatccatgatcaatacggacgtcgaagacgta gcatgcagaatagtcaggtacacccccgtccctcaacagtggccaaagagaaactagtcgtcgtaggtggttaccattgt aaaaacgtagagatgtatgatccagtcaaggaaaagtggtttgatctcccggaattcccaaaaatcataatccacaacag tgtgtcagtagtggccaactctatcattgtgactggtggcattttagaaaacagcataattccagatgtttggaagtttg atagcgtaaaacgtacttggcagtctatttgttcaatgttgaaacctcgtgcaaggcatgcatcgggtattctcaatgac aggctttttgtaataggtggcatcacctatgactcccacaattcggtagttgatatagaggccatagagagttatgattt tgtgaccaatacatggagtgttgttggacattcaccgtttccaaggcagtcatctcgggtcttcagtcacggagatgctc tggtggaggtcggtggcatgcaaggtggtgctgtagtgaacacaatagatagctatcttcttagtgataatggacacatg aagtcaacaggggagcaattcattcttccagaacccattcagaatgctcaaatcattgtgataaatggcattttctatat catttgggaggacactaagaaaatgattgcgttaaatcctcagaaacgaacattccagcagctgtctgatatgcactttg tacacaagcagagtggagcgacagttttaggggagaagctgtacattacagggggccttgtggactcccgagcttgttct actgtagagtgctacgaccctgtaacagacacatggactgtggaaccaatgatgtcagaaccccatgcttttcatggttg tgtcactcttttactctag |
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Protein
| Protein ID | pfu_aug2.0_27.1_23271.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_27.1_23271.t1 MDAKDREKFIIDDPDYGRELLRNLNSLRHSNMFTDATLYIQHEELYCHRNILAASSPYFRAMFTHNLREEKHLHPSNCLG IEYFTQMYACDKLMEKAHKYALENFSGVVECEEFLEMSIDRLLQYLASDWIDVRTEETVYDAVMQWIDYDMDKRKDNLFD LLSQVRLPIIQMNNLKVMAKHPLIRNCEDCLQLVMEAQEQHESIHDQYGRRRRSMQNSQVHPRPSTVAKEKLVVVGGYHC KNVEMYDPVKEKWFDLPEFPKIIIHNSVSVVANSIIVTGGILENSIIPDVWKFDSVKRTWQSICSMLKPRARHASGILND RLFVIGGITYDSHNSVVDIEAIESYDFVTNTWSVVGHSPFPRQSSRVFSHGDALVEVGGMQGGAVVNTIDSYLLSDNGHM KSTGEQFILPEPIQNAQIIVINGIFYIIWEDTKKMIALNPQKRTFQQLSDMHFVHKQSGATVLGEKLYITGGLVDSRACS TVECYDPVTDTWTVEPMMSEPHAFHGCVTLLL |
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