Gene
| Gene Model ID | pfu_aug2.0_27.1_23274 |
|---|---|
| Locus | scaffold27.1 : 376549 ... 389232 : + |
| To GenomeBrowser | scaffold27.1:376549..389232 |
| Genes list of scaffold | scaffold27.1 |
| Synonym | pfu_aug1.0_12474.1_39335 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| cop9 signalosome complex subunit 5-like | GO:0006508 GO:0008180 GO:0008234 GO:0008237 GO:0046872 GO:0048471 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_27.1_23274.t1 | 1 | 1 | JAB | 49 | 160 | 4.5e-34 | 116.6 | 1.4e-37 | 7.1e-34 | 115.9 |
| pfu_aug2.0_27.1_23274.t1 | 1 | 1 | Prok-JAB | 58 | 161 | 5.8e-07 | 29.0 | 1.9e-10 | 9.5e-07 | 28.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_27.1_23274.t1 | gi|676429753|ref|XP_009045703.1| | hypothetical protein LOTGIDRAFT_224262 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_27.1_23274.t1 | gi|524885955|ref|XP_005099578.1| | PREDICTED: COP9 signalosome complex subunit 5-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_27.1_23274.t1 | gi|665801548|ref|XP_008548790.1| | PREDICTED: COP9 signalosome complex subunit 5-like [Microplitis demolitor] | 0.0 |
| pfu_aug2.0_27.1_23274.t1 | gi|632940086|ref|XP_007885051.1| | PREDICTED: COP9 signalosome complex subunit 5 isoform X1 [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_27.1_23274.t1 | gi|557012591|ref|XP_006006855.1| | PREDICTED: COP9 signalosome complex subunit 5 isoform X1 [Latimeria chalumnae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_27.1_23274.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_27.1_23274.t1 atggactcgaaaaatgcactgaaaacttgggaactgagcaataacattgagaacgttaatagtatagatgaaatttatcg atatgataaaagacaacaacaggacattttaacagcgaaaccatgggaaaaagatccacactacttcaaacacataaaga tatcagcactagctttgttgaaaatggtgatgcatgcacgatcaggagggaatctggaggtgatgggtcttttactgggt aaagttgacgggaacaccatgattgttatggacagttttgccctccctgtagagggcactgaaactcgtgtcaacgccca ggcacaagcttatgagtacatggctgaatacacagaatcagcaaaacaggttgggagattagagaatgccattggttggt atcacagtcacccaggatacggctgttggctgtcaggaatagatgtcaatacacagatgctcaatcaacagttccaggaa ccttttgtggcaattgtagtggatccagtacgcacaatctctgcagggaaagtcaatataggtgctttcagaacttatcc taaaggatttaagccaccagatgaaggtccctcagagtatcagtccatccctctcaataaaatagaagattttggtgttc attgtaaacactattacacgctggatatatcatacttcaagtcctcactagacagaaaactactagaatctctatggaat aaatactgggtaaacactctcagttcatcaagtcttctcacaaatgcagattacacgactggtcagatatttgacttggc agacaaactagagcagtcggaggttcagcttggtcgagggggatttatgatgggtatagattctcatgacaagaaatcag aggacaaattagccaaagctacaaaagatgggtgcaaaacaacaatggaagctatacatggacttatgtcacaagtgatt aaagacagactatttaatcaagtacatctgccaaaatga |
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Protein
| Protein ID | pfu_aug2.0_27.1_23274.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_27.1_23274.t1 MDSKNALKTWELSNNIENVNSIDEIYRYDKRQQQDILTAKPWEKDPHYFKHIKISALALLKMVMHARSGGNLEVMGLLLG KVDGNTMIVMDSFALPVEGTETRVNAQAQAYEYMAEYTESAKQVGRLENAIGWYHSHPGYGCWLSGIDVNTQMLNQQFQE PFVAIVVDPVRTISAGKVNIGAFRTYPKGFKPPDEGPSEYQSIPLNKIEDFGVHCKHYYTLDISYFKSSLDRKLLESLWN KYWVNTLSSSSLLTNADYTTGQIFDLADKLEQSEVQLGRGGFMMGIDSHDKKSEDKLAKATKDGCKTTMEAIHGLMSQVI KDRLFNQVHLPK |
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