Gene
| Gene Model ID | pfu_aug2.0_27.1_23276 |
|---|---|
| Locus | scaffold27.1 : 454850 ... 468058 : - |
| To GenomeBrowser | scaffold27.1:454850..468058 |
| Genes list of scaffold | scaffold27.1 |
| Synonym | pfu_aug1.0_15821.1_03644 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_27.1_23276.t1 | 4 | 1 | TPR_11 | 42 | 105 | 1.1e-11 | 44.1 | 8.7e-08 | 8.6e-05 | 22.1 |
| pfu_aug2.0_27.1_23276.t1 | 5 | 1 | TPR_2 | 47 | 70 | 2.1e-08 | 33.4 | 0.014 | 13.0 | 5.9 |
| pfu_aug2.0_27.1_23276.t1 | 4 | 1 | TPR_12 | 53 | 103 | 6.5e-09 | 35.5 | 2.4e-06 | 0.0023 | 17.7 |
| pfu_aug2.0_27.1_23276.t1 | 2 | 1 | TPR_19 | 55 | 109 | 2.1e-08 | 34.3 | 5.7e-07 | 0.00056 | 20.1 |
| pfu_aug2.0_27.1_23276.t1 | 7 | 1 | TPR_8 | 55 | 68 | 1.9e-06 | 27.2 | 2.9 | 2800.0 | -1.5 |
| pfu_aug2.0_27.1_23276.t1 | 3 | 1 | TPR_16 | 55 | 94 | 5.8e-06 | 26.8 | 0.00014 | 0.14 | 12.8 |
| pfu_aug2.0_27.1_23276.t1 | 7 | 1 | TPR_1 | 56 | 70 | 1.6e-06 | 27.4 | 0.1 | 100.0 | 2.7 |
| pfu_aug2.0_27.1_23276.t1 | 4 | 1 | TPR_17 | 62 | 95 | 4.3e-12 | 45.2 | 6.2e-05 | 0.061 | 13.5 |
| pfu_aug2.0_27.1_23276.t1 | 5 | 2 | TPR_2 | 76 | 106 | 2.1e-08 | 33.4 | 4.0e-06 | 0.0039 | 16.9 |
| pfu_aug2.0_27.1_23276.t1 | 7 | 2 | TPR_8 | 80 | 106 | 1.9e-06 | 27.2 | 1.5e-05 | 0.015 | 15.0 |
| pfu_aug2.0_27.1_23276.t1 | 7 | 2 | TPR_1 | 81 | 106 | 1.6e-06 | 27.4 | 3.4e-06 | 0.0033 | 16.9 |
| pfu_aug2.0_27.1_23276.t1 | 7 | 3 | TPR_8 | 112 | 134 | 1.9e-06 | 27.2 | 0.06 | 60.0 | 3.7 |
| pfu_aug2.0_27.1_23276.t1 | 4 | 2 | TPR_12 | 120 | 134 | 6.5e-09 | 35.5 | 1.7 | 1700.0 | -1.0 |
| pfu_aug2.0_27.1_23276.t1 | 7 | 3 | TPR_1 | 123 | 134 | 1.6e-06 | 27.4 | 0.033 | 33.0 | 4.3 |
| pfu_aug2.0_27.1_23276.t1 | 4 | 2 | TPR_11 | 124 | 194 | 1.1e-11 | 44.1 | 0.0018 | 1.8 | 8.2 |
| pfu_aug2.0_27.1_23276.t1 | 5 | 3 | TPR_2 | 124 | 134 | 2.1e-08 | 33.4 | 0.37 | 370.0 | 1.4 |
| pfu_aug2.0_27.1_23276.t1 | 4 | 2 | TPR_17 | 161 | 176 | 4.3e-12 | 45.2 | 0.037 | 37.0 | 4.8 |
| pfu_aug2.0_27.1_23276.t1 | 4 | 3 | TPR_12 | 163 | 231 | 6.5e-09 | 35.5 | 0.0015 | 1.4 | 8.8 |
| pfu_aug2.0_27.1_23276.t1 | 7 | 4 | TPR_1 | 166 | 176 | 1.6e-06 | 27.4 | 1.7 | 1700.0 | -1.1 |
| pfu_aug2.0_27.1_23276.t1 | 7 | 4 | TPR_8 | 166 | 176 | 1.9e-06 | 27.2 | 0.89 | 880.0 | 0.1 |
| pfu_aug2.0_27.1_23276.t1 | 5 | 4 | TPR_2 | 167 | 195 | 2.1e-08 | 33.4 | 0.24 | 240.0 | 2.0 |
| pfu_aug2.0_27.1_23276.t1 | 3 | 2 | TPR_16 | 189 | 234 | 5.8e-06 | 26.8 | 0.0067 | 6.6 | 7.5 |
| pfu_aug2.0_27.1_23276.t1 | 7 | 5 | TPR_1 | 190 | 202 | 1.6e-06 | 27.4 | 1.6 | 1600.0 | -1.1 |
| pfu_aug2.0_27.1_23276.t1 | 7 | 5 | TPR_8 | 190 | 202 | 1.9e-06 | 27.2 | 2.2 | 2100.0 | -1.1 |
| pfu_aug2.0_27.1_23276.t1 | 4 | 3 | TPR_11 | 192 | 222 | 1.1e-11 | 44.1 | 0.0015 | 1.4 | 8.5 |
| pfu_aug2.0_27.1_23276.t1 | 2 | 2 | TPR_19 | 192 | 236 | 2.1e-08 | 34.3 | 0.00016 | 0.15 | 12.3 |
| pfu_aug2.0_27.1_23276.t1 | 4 | 3 | TPR_17 | 193 | 224 | 4.3e-12 | 45.2 | 3.1e-06 | 0.003 | 17.6 |
| pfu_aug2.0_27.1_23276.t1 | 4 | 4 | TPR_11 | 203 | 268 | 1.1e-11 | 44.1 | 2.8e-06 | 0.0028 | 17.2 |
| pfu_aug2.0_27.1_23276.t1 | 7 | 6 | TPR_1 | 205 | 225 | 1.6e-06 | 27.4 | 5.4 | 5300.0 | -2.7 |
| pfu_aug2.0_27.1_23276.t1 | 7 | 6 | TPR_8 | 205 | 228 | 1.9e-06 | 27.2 | 0.13 | 130.0 | 2.6 |
| pfu_aug2.0_27.1_23276.t1 | 4 | 4 | TPR_12 | 222 | 271 | 6.5e-09 | 35.5 | 0.00053 | 0.53 | 10.2 |
| pfu_aug2.0_27.1_23276.t1 | 3 | 3 | TPR_16 | 226 | 260 | 5.8e-06 | 26.8 | 0.097 | 96.0 | 3.8 |
| pfu_aug2.0_27.1_23276.t1 | 4 | 4 | TPR_17 | 231 | 254 | 4.3e-12 | 45.2 | 0.011 | 11.0 | 6.4 |
| pfu_aug2.0_27.1_23276.t1 | 5 | 5 | TPR_2 | 239 | 257 | 2.1e-08 | 33.4 | 0.017 | 17.0 | 5.6 |
| pfu_aug2.0_27.1_23276.t1 | 7 | 7 | TPR_1 | 239 | 254 | 1.6e-06 | 27.4 | 0.061 | 60.0 | 3.4 |
| pfu_aug2.0_27.1_23276.t1 | 7 | 7 | TPR_8 | 239 | 269 | 1.9e-06 | 27.2 | 0.0054 | 5.3 | 7.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_27.1_23276.t1 | gi|676427750|ref|XP_009045049.1| | hypothetical protein LOTGIDRAFT_237436 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_27.1_23276.t1 | gi|524879535|ref|XP_005096442.1| | PREDICTED: UPF0661 TPR repeat-containing protein C16D10.01c-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_27.1_23276.t1 | gi|585663729|ref|XP_006811886.1| | PREDICTED: UPF0661 TPR repeat-containing protein C16D10.01c-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_27.1_23276.t1 | gi|390354886|ref|XP_003728431.1| | PREDICTED: UPF0661 TPR repeat-containing protein C16D10.01c isoform X1 [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_27.1_23276.t1 | gi|512848826|ref|XP_004915479.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_27.1_23276.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_27.1_23276.t1 atgttaagagcctcggttttctgtgatgcagaagaagacagaagaaaaattctccagcaagcaaggaaagagatagctaa agagacatcaggaaagaaggctaccccaacgtactctgtggatcagttactggataaagcagaggaatgtatagatcgat ttgagtatgaagttgcccagaaattctgtcagagagcattggagcaggaagcagacaatgtgcgagctttagagacatca ggaaacttactcctggaactcggcaacaatgaggcggcaaaacagtgctttggtagagccgtggaagtcagtccagatgt tggttacagtaaatacatgactctcggtcagctaatggagggatccagtgctgtacagtgtttccagaaaggcatagagc tcatggtggcagagagggagaaacaaagtgcacaggagttatcagcggcctgcgggggtcatgaggaggatgccgtttct gacaaggatatatctaacgcctactgcgctatggctgaaatctacatgacagatctatgttttgaggaggaagcagaagt gaagtgtgagaatgcaataaaagaagccataaaagctgactctaataattcagaggcccttcagcttatggctagcttct atctctctaaggagaaaaaagagacatctatagacgtacttgagtgtttattggatgagaatgaggacatacctcaggtg tggtataccattggttgggctaactatttacaaggcgaggattacaaggctaacgctaggttctatctcaacaaatgtaa aaagatatacaccaaggtgaaatgtgaagatggggagctgttaaaacatgtagaagaactactccttgagctaggaccag gagatgaggatgatgatgaagaggggggagatgtagtaggagaagatggtgctgaccttgacattgatagtgataatgaa agtgaaactgaaaacatggagcattga |
|
Protein
| Protein ID | pfu_aug2.0_27.1_23276.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_27.1_23276.t1 MLRASVFCDAEEDRRKILQQARKEIAKETSGKKATPTYSVDQLLDKAEECIDRFEYEVAQKFCQRALEQEADNVRALETS GNLLLELGNNEAAKQCFGRAVEVSPDVGYSKYMTLGQLMEGSSAVQCFQKGIELMVAEREKQSAQELSAACGGHEEDAVS DKDISNAYCAMAEIYMTDLCFEEEAEVKCENAIKEAIKADSNNSEALQLMASFYLSKEKKETSIDVLECLLDENEDIPQV WYTIGWANYLQGEDYKANARFYLNKCKKIYTKVKCEDGELLKHVEELLLELGPGDEDDDEEGGDVVGEDGADLDIDSDNE SETENMEH |
|