Gene
| Gene Model ID | pfu_aug2.0_27.1_23284 |
|---|---|
| Locus | scaffold27.1 : 602643 ... 624499 : + |
| To GenomeBrowser | scaffold27.1:602643..624499 |
| Genes list of scaffold | scaffold27.1 |
| Synonym | pfu_aug1.0_7607.1_67707 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_27.1_23284.t1 | 5 | 1 | Vault | 14 | 68 | 1.6e-28 | 98.4 | 5.2e-05 | 0.25 | 11.3 |
| pfu_aug2.0_27.1_23284.t1 | 5 | 2 | Vault | 117 | 157 | 1.6e-28 | 98.4 | 9.1e-06 | 0.045 | 13.8 |
| pfu_aug2.0_27.1_23284.t1 | 5 | 3 | Vault | 175 | 210 | 1.6e-28 | 98.4 | 1.1e-11 | 5.5e-08 | 32.7 |
| pfu_aug2.0_27.1_23284.t1 | 5 | 4 | Vault | 223 | 260 | 1.6e-28 | 98.4 | 2.3e-09 | 1.1e-05 | 25.3 |
| pfu_aug2.0_27.1_23284.t1 | 5 | 5 | Vault | 327 | 347 | 1.6e-28 | 98.4 | 0.00016 | 0.77 | 9.8 |
| pfu_aug2.0_27.1_23284.t1 | 1 | 1 | MVP_shoulder | 497 | 614 | 0.0 | 155.1 | 0.0 | 1.4013e-45 | 154.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_27.1_23284.t1 | gi|524865600|ref|XP_005089628.1| | PREDICTED: major vault protein-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_27.1_23284.t1 | gi|676470667|ref|XP_009058923.1| | hypothetical protein LOTGIDRAFT_123412 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_27.1_23284.t1 | gi|459176322|ref|XP_002119317.2| | PREDICTED: major vault protein [Ciona intestinalis] | 0.0 |
| pfu_aug2.0_27.1_23284.t1 | gi|196010249|ref|XP_002114989.1| | hypothetical protein TRIADDRAFT_64160 [Trichoplax adhaerens] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_27.1_23284.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_27.1_23284.t1 atgtcgggaagcatatatggttttgcacctttgcaatttgtccacatactggacttaaacactaacatcacaagattgga gacaggacctaaaacactggcactgaaatccaatgagagagtgacagcaggtccacttcctatgatagtggtcaagcctg gacattactgtgtcattaaggacccatgctgcaagtacataccaggatttgcttgtgagttaaggcttggagagacagag ataaagttccattcagatccatttcccctctatcctggagaatcgttggtggatgccgcagatttcctgaagggaaacgc agattattctaaggcagtaaagaagctacccgtcattaaggcaaactatggcatccgtctgtacgtcaaactggactttg aggacgagctgggaaagcattatgcaggagatacgtaccagctggaagggccgctaacatacaaaccaaggccagaagtg gatgtccgggagatagttgagcctgttattgttagatcaggaacagttctaaagataaaagccacccaggagttcaccga cagaaatggaactgagagagtgacagcagaagaatggatggtgaccaaagaaggagcatacttacctgatgtctttgagc aggtggtatccgtggagaagaaaattacactgacaccagattgtggaattcacttatatgcagtacagtctgttaccgat cagtttggcaggaaaaggcttgcaggagaatcttggcttctgacaggagaagatgtaaatgaatatccccctgaaatagg cgtggaagtaagaggtcaggtaaacaaaatggttttatggaaaggacaatacgctgtcatagaaaatgttgtcgacaaaa agggtaaacctcagcttggaaaacgagagctacgtgttggaccatgctcattctttatgcatccacatgaaagcttagaa aaaggtaaagtacaggatgcttatgtgatgggtgaaaaccaggcactcatattgactgctgatgaagaatttaaggataa aatgttcaaaactaaaatcccactgagcaagaatgaaggaatctatgtccaagactggaaaacaggacaggtacggactg agatgggaccaatgtcatacatgttaacagagaatgaagaattatggtgtaaggaactacctggtaacacagaaaattta cttaaacaaggaggtggtggtggaggtcaggatatcagaaagatggcgtactttgaacaatcaatagatcctcacatgtt aaagggtcgagataagactagacttgtgacatacagatgtcctggtaacacagcagtccaggtgtacaactatctagaga agacagctcgtgttgtgttcggtccagatctggtcatattgggagctcatgaaaatttcaacgttttaagtttgagtgcg ggaaaaccaaagaaaagtgatgctctacaatcattgtgccttatgctgggaccagactttattagtgatattatagaggt agaaacatcagaccatgctcgtttacgtatacagttagctttcaacaatcattttgagtacacgataggtgacaaagaga gtgaagcaaggatattttctgttcctgatttcataggatttgcttgtcgacaactaggtgctcgtatcagaggagcagtt gctcaggtgacctttgacgaatttcatcgacactcagcttctgtgatccaagcttctgtatttggactagatgagtcagg aaacttaaaaactcaactcaaattccctgctaataatctggtgatcagtagtatcgacatacagagcatagaaccagtgg atatcaagatgagagacagcttaagtaaatctgtacaactagccatagaaatttctactaagtcaatagaggcagcagct tcccatgaggcagctagaaatgagcagattgctcagggtgagctggaaagacaaaaactaaccaatgaaaaagaatcaga aaaagagagggccaaattgttagagctacaggccatagctgcagctgtggaatccacagggcaggccaaagctgaggccc aggcacaagccgagagaatgatcatagaatgtgaaagtgaaattgaggctgcacgacttaaagctgaggctgaggaaata gaacattatgccaagctagaggcccaggctatgctacggtcagaggaattgtccttcacaaagaaccaaaataacctgga gatttataaagaaagggaaatgtccaatattgagacttccaaatttaagaagatgatagatgctataggagctgatgtgt tggctgccatagcaacctctggaccagagactcaggtgaagatgctgagtgccttaggacttgatagtgttttgatcact gatggtaattctcccatcaacttgttccaaacagccaaaggtttaattggagagccaatgcaggaatga |
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Protein
| Protein ID | pfu_aug2.0_27.1_23284.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_27.1_23284.t1 MSGSIYGFAPLQFVHILDLNTNITRLETGPKTLALKSNERVTAGPLPMIVVKPGHYCVIKDPCCKYIPGFACELRLGETE IKFHSDPFPLYPGESLVDAADFLKGNADYSKAVKKLPVIKANYGIRLYVKLDFEDELGKHYAGDTYQLEGPLTYKPRPEV DVREIVEPVIVRSGTVLKIKATQEFTDRNGTERVTAEEWMVTKEGAYLPDVFEQVVSVEKKITLTPDCGIHLYAVQSVTD QFGRKRLAGESWLLTGEDVNEYPPEIGVEVRGQVNKMVLWKGQYAVIENVVDKKGKPQLGKRELRVGPCSFFMHPHESLE KGKVQDAYVMGENQALILTADEEFKDKMFKTKIPLSKNEGIYVQDWKTGQVRTEMGPMSYMLTENEELWCKELPGNTENL LKQGGGGGGQDIRKMAYFEQSIDPHMLKGRDKTRLVTYRCPGNTAVQVYNYLEKTARVVFGPDLVILGAHENFNVLSLSA GKPKKSDALQSLCLMLGPDFISDIIEVETSDHARLRIQLAFNNHFEYTIGDKESEARIFSVPDFIGFACRQLGARIRGAV AQVTFDEFHRHSASVIQASVFGLDESGNLKTQLKFPANNLVISSIDIQSIEPVDIKMRDSLSKSVQLAIEISTKSIEAAA SHEAARNEQIAQGELERQKLTNEKESEKERAKLLELQAIAAAVESTGQAKAEAQAQAERMIIECESEIEAARLKAEAEEI EHYAKLEAQAMLRSEELSFTKNQNNLEIYKEREMSNIETSKFKKMIDAIGADVLAAIATSGPETQVKMLSALGLDSVLIT DGNSPINLFQTAKGLIGEPMQE |
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