Gene
| Gene Model ID | pfu_aug2.0_27.1_23285 |
|---|---|
| Locus | scaffold27.1 : 637383 ... 649947 : + |
| To GenomeBrowser | scaffold27.1:637383..649947 |
| Genes list of scaffold | scaffold27.1 |
| Synonym | pfu_aug1.0_92455.1_20772 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_27.1_23285.t1 | 1 | 1 | DUF3548 | 30 | 170 | 2.7003e-42 | 144.4 | 1.4013e-45 | 4.90034e-42 | 143.6 |
| pfu_aug2.0_27.1_23285.t1 | 1 | 1 | RabGAP-TBC | 280 | 404 | 1.8e-29 | 102.7 | 8.9e-33 | 3.3e-29 | 101.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_27.1_23285.t1 | gi|524895519|ref|XP_005104242.1| | PREDICTED: TBC1 domain family member 15-like isoform X2 [Aplysia californica] | 0.0 |
| pfu_aug2.0_27.1_23285.t1 | gi|676485184|ref|XP_009063579.1| | hypothetical protein LOTGIDRAFT_221303 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_27.1_23285.t1 | gi|524895517|ref|XP_005104241.1| | PREDICTED: TBC1 domain family member 15-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_27.1_23285.t1 | gi|584029618|ref|XP_006809314.1| | PREDICTED: LOW QUALITY PROTEIN: TBC1 domain family member 15-like [Neolamprologus brichardi] | 0.0 |
| pfu_aug2.0_27.1_23285.t1 | gi|752870139|ref|XP_011252210.1| | PREDICTED: LOW QUALITY PROTEIN: TBC1 domain family member 15 [Camponotus floridanus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_27.1_23285.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_27.1_23285.t1 atgggaatcgggtatctcatcagcataataaaggattaccggtcgcctgagggaacatttatagaatggaaagctgaaga gattctccaagtagacggtaaccaggaccaagactgggccgttattggatcctccctgtccgtgggatataaaccagaca aagattctgacgcattaaatatgttgacagagtcaaggaagaaatacaatgttagttttgatctgatggacctaaaaagc ttcaaaagaaatgctccgaatcatggctgggcatacattatcttcatactaaaagatgggaccacatacccagcactcca ttttcataatggtggcagcaaagcacttctccagcaatttggaaaatacattcacatcaaacggtctccaaacgatagtc ggctatttatagtccaggagcatgatccagatatgctttcaaagtccttcgatgagctccatctttttgcagattcctcc agtgatctcgtttcaaaattcatcaaagatccctacacaacaacacttggagggttttccaaagtgaccaattttttgcg tgatacgttattacaacaagaagtagccattcatcggccaaaagaggagctggcggccatcttgaatgaagaaattcctg gtatggagatcagtcagcaagagccaggatatgaattagtcacaaagactaagcttccctcacgaccagaagtagaaaga agtgctcctctgaataatactgaatggaccaaacacatggacaaggagggtagaatccttaatgtagatcatctcaaaga agtcatatttagagggggtatagatcctggtatcagaagttatgtccaaggtatgagtgacctactttctcccatcctgg ttgtcatggaaaatgaagtcgactcattctggtgttttgcaggtctaatggagagagtgtgtaataattttgagatggac caagctgggatgaaggtacagttagcccaattacataaactgatgcagtttacagacccagaattatgtggttacctaga gagccacgattctgggaacttttatttttgtttccgttggttattgatacagtttaaaagagagttttcattccaagatg tacagaggttgtgggaggtgatatggacagatctgccgtgtaaaaacttccatcttttaatctgtcttgccatattagat actgaaaaaactacactgatagaaaacaaatttggattcactgaaatactcaagcacatcaatgatatgacgggtgcaat acatctagaggaaaccttaaggaaagcagagggtatattcctacagctgaaacaaagtaaaaagcttccagatgctctga aggaaatcattggagtggaggtcacgccaagtagctctacgtcaagttcaaactttgtcacccccgcgggtactccagtc aacgtagaggcagtgccaaaactagagaaattgactctactcaaagaaaacggacatagtaatnttgtaattgaggattt acttcacatcaatgatatgacgggtgcaatacatctagaggaaaccttaaggaaagcagagggtatattcctacagctga aacaaagtaagaagcttccagatgctctgaaggaaatcattggagtggaggtcacacccagtagctctacgtcaagttca aactttgtcacccccgcgggtactccagtcaacgtagaggcagtgccaaaactagagaaattgactctacccaaagaaaa cggacatagtaacgcaagttctggtacgggtacggcagttacgacacctgatgatagtagtatagaaattctggtggaaa acggagcagattcggccgtcacgaattttttcacttga |
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Protein
| Protein ID | pfu_aug2.0_27.1_23285.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_27.1_23285.t1 MGIGYLISIIKDYRSPEGTFIEWKAEEILQVDGNQDQDWAVIGSSLSVGYKPDKDSDALNMLTESRKKYNVSFDLMDLKS FKRNAPNHGWAYIIFILKDGTTYPALHFHNGGSKALLQQFGKYIHIKRSPNDSRLFIVQEHDPDMLSKSFDELHLFADSS SDLVSKFIKDPYTTTLGGFSKVTNFLRDTLLQQEVAIHRPKEELAAILNEEIPGMEISQQEPGYELVTKTKLPSRPEVER SAPLNNTEWTKHMDKEGRILNVDHLKEVIFRGGIDPGIRSYVQGMSDLLSPILVVMENEVDSFWCFAGLMERVCNNFEMD QAGMKVQLAQLHKLMQFTDPELCGYLESHDSGNFYFCFRWLLIQFKREFSFQDVQRLWEVIWTDLPCKNFHLLICLAILD TEKTTLIENKFGFTEILKHINDMTGAIHLEETLRKAEGIFLQLKQSKKLPDALKEIIGVEVTPSSSTSSSNFVTPAGTPV NVEAVPKLEKLTLLKENGHSNXVIEDLLHINDMTGAIHLEETLRKAEGIFLQLKQSKKLPDALKEIIGVEVTPSSSTSSS NFVTPAGTPVNVEAVPKLEKLTLPKENGHSNASSGTGTAVTTPDDSSIEILVENGADSAVTNFFT |
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