Gene
| Gene Model ID | pfu_aug2.0_270.1_00521 |
|---|---|
| Locus | scaffold270.1 : 612 ... 19925 : - |
| To GenomeBrowser | scaffold270.1:612..19925 |
| Genes list of scaffold | scaffold270.1 |
| Synonym | pfu_aug1.0_28180.1_40709 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_270.1_00521.t1 | 2 | 1 | zf-B_box | 10 | 45 | 4.8e-06 | 26.3 | 9.6e-10 | 4.8e-06 | 26.3 |
| pfu_aug2.0_270.1_00521.t1 | 2 | 2 | zf-B_box | 58 | 66 | 4.8e-06 | 26.3 | 0.64 | 3100.0 | -1.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_270.1_00521.t1 | gi|701385612|ref|XP_009988810.1| | PREDICTED: tripartite motif-containing protein 2-like, partial [Tauraco erythrolophus] | 6.0e-07 |
| pfu_aug2.0_270.1_00521.t1 | gi|723129252|ref|XP_010280924.1| | PREDICTED: tripartite motif-containing protein 2-like, partial [Phaethon lepturus] | 7.0e-07 |
| pfu_aug2.0_270.1_00521.t1 | gi|675623336|ref|XP_008939837.1| | PREDICTED: tripartite motif-containing protein 2-like, partial [Merops nubicus] | 8.0e-07 |
| pfu_aug2.0_270.1_00521.t1 | gi|528467909|ref|XP_005170947.1| | PREDICTED: tripartite motif-containing protein 2 isoform X2 [Danio rerio] | 2.0e-06 |
| pfu_aug2.0_270.1_00521.t1 | gi|698467990|ref|XP_009705340.1| | PREDICTED: tripartite motif-containing protein 2-like [Cariama cristata] | 2.0e-06 |
Transcript
| Transcript ID | pfu_aug2.0_270.1_00521.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_270.1_00521.t1 atggcaacaattgagctccaatcagctgttccaatgtgcaaacatcataccaaggaggaattagactcgtactgcttcac atgcgaattgaggatttgtgaggaatgttgtcgagggcgccacatgacgcataattggaggagatcaaagaatgccgcca gagagatcagggaaaactcatgtgctagatgtgagaaaatagaaggcatgatcagtgaactggaacataataaagaggat agggagacagaggccgatatagagaggatagataagttaaagatggagtttgtatccttcatagatgacctggcggagga gatgaaaaccaagagaaggagaggaaggtcacagaggaatttgacaaaggaactagagaaactgaggaaaatgctcaact tctacaagaatgaagtcgaattagggaaaagatacttagcttctgacttcaacttcacgtacagatacatagacgatgtg ttgtccattgataatccaacattcgcggattacctgagcagtatctatccttcagagcttgaagtcaaagaaactacaga gacaaataattcagcatcctatttgaacataatgttgtcctacgacactgatggtcacatgaacacctcacactatgaca aacgtgtcgacttcaatttcagcattacaaactttccttttctgagtagcaacatcccttcatcgtctgcttatggcgtg ttcatatctcagttgatacgctatgccagagcaattaaggacaatgtcacccttgaggttgaagaggagcttcacatttt acaggaaaacatctcgtcattatcaatacaatcagggaagaagaaactaaagtttagagaaggcaatttgtccccaggtg tcctccagggtatgtttggtgacgtcgtggaagataagtcagaatcaaagatggagatcataaaaaaatcctattttaca catgttgatgattcagcttctatatggaatatcatccctgtgacatgtaatgaagcattaatgatccgccgtatatcctc ctccggtaaagtgagtgacgtcaagtccacagctcctctacatcctagtggtatcagtacatcacgtgatggcggtatcc ttgtcacactgtgtgactgttacccaacacatataacatcatcaagtagaggagaggttatacagaccacctacacggga cggatcatactgaggttcggacacacagagggacatacagataaaatattattcaatcctgtcagggtagcacagaacat taatatggacctctgtgtggttgataacatagataaggagttcagaacccgacttgtggtgttatcgataaaaggacatc ataaattctgttacacagggcagccatcactcaaggagaagtttgtatcaggtgacgtagtgtgtgaccaccaagggagg atactggtgacggattactacaacgacgcagtgcatctgcttagtaaggacggtcgcttcctgggtctgatactaacaaa acagagtcctctcttggggccatggtgcctgggtctacatgatgatacactgtgggttgggtgtgcgaaaggtgtggtca gagtgtacaaatacaacgaggatagctattag |
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Protein
| Protein ID | pfu_aug2.0_270.1_00521.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_270.1_00521.t1 MATIELQSAVPMCKHHTKEELDSYCFTCELRICEECCRGRHMTHNWRRSKNAAREIRENSCARCEKIEGMISELEHNKED RETEADIERIDKLKMEFVSFIDDLAEEMKTKRRRGRSQRNLTKELEKLRKMLNFYKNEVELGKRYLASDFNFTYRYIDDV LSIDNPTFADYLSSIYPSELEVKETTETNNSASYLNIMLSYDTDGHMNTSHYDKRVDFNFSITNFPFLSSNIPSSSAYGV FISQLIRYARAIKDNVTLEVEEELHILQENISSLSIQSGKKKLKFREGNLSPGVLQGMFGDVVEDKSESKMEIIKKSYFT HVDDSASIWNIIPVTCNEALMIRRISSSGKVSDVKSTAPLHPSGISTSRDGGILVTLCDCYPTHITSSSRGEVIQTTYTG RIILRFGHTEGHTDKILFNPVRVAQNINMDLCVVDNIDKEFRTRLVVLSIKGHHKFCYTGQPSLKEKFVSGDVVCDHQGR ILVTDYYNDAVHLLSKDGRFLGLILTKQSPLLGPWCLGLHDDTLWVGCAKGVVRVYKYNEDSY |
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