Gene
| Gene Model ID | pfu_aug2.0_270.1_00524 |
|---|---|
| Locus | scaffold270.1 : 110463 ... 130765 : - |
| To GenomeBrowser | scaffold270.1:110463..130765 |
| Genes list of scaffold | scaffold270.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_270.1_00524.t1 | 1 | 1 | Frag1 | 87 | 286 | 2.5e-34 | 118.6 | 6.8e-38 | 3.4e-34 | 118.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_270.1_00524.t1 | gi|545816516|ref|XP_005655267.1| | PREDICTED: transmembrane protein 150A-like isoform X2 [Sus scrofa] | 2.0e-21 |
| pfu_aug2.0_270.1_00524.t1 | gi|311252231|ref|XP_003124990.1| | PREDICTED: transmembrane protein 150A-like isoform X1 [Sus scrofa] | 2.0e-21 |
| pfu_aug2.0_270.1_00524.t1 | gi|560962863|ref|XP_006203860.1| | PREDICTED: transmembrane protein 150A [Vicugna pacos] | 4.0e-21 |
| pfu_aug2.0_270.1_00524.t1 | gi|466018098|ref|XP_004271652.1| | 5.0e-21 |
Transcript
| Transcript ID | pfu_aug2.0_270.1_00524.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_270.1_00524.t1 atgttggtttcgtttgagagacacctacatcgccataaatatggagtcagtattgtaaactggctcaaattttcgtcaac ccgagattctctcctgtcgaaacaaaaagacttaaagaaaaaagggatgggaaataaaccgaaagctgccgataccatca ctgatggtgaaatagataaactgtacgaaactggtcaacttggcacagagacaccatcagctataatgaaataccctgtg gttcaacaacactttatactttggtatgttttacttctggatgcggtgacagatttaccaactccgccaagttggggtac agggtttccctatataagtgatgcagggatatatccacccggtagctgctggttcacactactatttacctttgtcgcct tctttagttttacaacaagcatagtgcgctatatgcaacttcaaactagaggtagaaatcgttgttgcgtcaatgttttg aacaaaattacaatgttatcagggtgtgcagcagcatttggcatcgttatggttggttctttccagtatactaatgcacg tggattacatctgaccggggcaggaactgcttttatttccggttctgtattctgtgttctacaaacggtgttgtcttttg ttgtacctaacatgccaggaaacacaaagatttgtaaagctgtaagagtcgtcatgaatgctattaccgttacagatttg atatgtttgggtgtttttctgtaccagttccatgctaaaaacatggaagtggacagacaaaatgcagcaattacggaatg gatcttggcaatcagtatagggatatacccgttaacatttatacatgaaatcagacactttgtgctggatcagagattga agcgaacaaatgagttggagtcaaatgtgagatgttgctgtgtttaccctaaagtttag |
|
Protein
| Protein ID | pfu_aug2.0_270.1_00524.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_270.1_00524.t1 MLVSFERHLHRHKYGVSIVNWLKFSSTRDSLLSKQKDLKKKGMGNKPKAADTITDGEIDKLYETGQLGTETPSAIMKYPV VQQHFILWYVLLLDAVTDLPTPPSWGTGFPYISDAGIYPPGSCWFTLLFTFVAFFSFTTSIVRYMQLQTRGRNRCCVNVL NKITMLSGCAAAFGIVMVGSFQYTNARGLHLTGAGTAFISGSVFCVLQTVLSFVVPNMPGNTKICKAVRVVMNAITVTDL ICLGVFLYQFHAKNMEVDRQNAAITEWILAISIGIYPLTFIHEIRHFVLDQRLKRTNELESNVRCCCVYPKV |
|