Gene
| Gene Model ID | pfu_aug2.0_2724.1_15604 |
|---|---|
| Locus | scaffold2724.1 : 30096 ... 54570 : + |
| To GenomeBrowser | scaffold2724.1:30096..54570 |
| Genes list of scaffold | scaffold2724.1 |
| Synonym | pfu_aug1.0_22.1_14722 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| cubilin (intrinsic factor-cobalamin receptor) isoform cra_b | GO:0005488 GO:0012505 GO:0016020 GO:0043231 GO:0044444 GO:0044699 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2724.1_15604.t1 | 5 | 1 | CUB | 74 | 172 | 2.6e-21 | 75.7 | 2.4e-09 | 3.6e-05 | 23.7 |
| pfu_aug2.0_2724.1_15604.t1 | 5 | 2 | CUB | 175 | 249 | 2.6e-21 | 75.7 | 9.5e-09 | 0.00014 | 21.8 |
| pfu_aug2.0_2724.1_15604.t1 | 5 | 3 | CUB | 290 | 388 | 2.6e-21 | 75.7 | 3.6e-07 | 0.0053 | 16.8 |
| pfu_aug2.0_2724.1_15604.t1 | 5 | 4 | CUB | 394 | 437 | 2.6e-21 | 75.7 | 8.4e-05 | 1.2 | 9.1 |
| pfu_aug2.0_2724.1_15604.t1 | 5 | 5 | CUB | 497 | 548 | 2.6e-21 | 75.7 | 0.00022 | 3.3 | 7.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2724.1_15604.t1 | gi|585690086|ref|XP_006894385.1| | PREDICTED: cubilin-like [Elephantulus edwardii] | 2.0e-10 |
| pfu_aug2.0_2724.1_15604.t1 | gi|507704212|ref|XP_004716072.1| | PREDICTED: cubilin [Echinops telfairi] | 3.0e-09 |
| pfu_aug2.0_2724.1_15604.t1 | gi|149021111|gb|EDL78718.1| | cubilin (intrinsic factor-cobalamin receptor), isoform CRA_b [Rattus norvegicus] | 6.0e-09 |
Transcript
| Transcript ID | pfu_aug2.0_2724.1_15604.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2724.1_15604.t1 atgggtggtggtcaaggcggatccaaagaggggtggtggtggagacctgacatggccttcgtttatagatgtagctatga cacattcctcccgtactttgagcgaactatcgtagggtcagggaatgacaacatgagggtctttatacttctaattatca caacagggcttttggctaaagacgattcagatattgtggaaattttcaaaaatgcatctggcattatcgaaaacccggat gaaattctcggaaataaatattacaactttacgatagttccctatatgggaagcactatacacttagagacaaaggagtt caacttgaaggacccagataaatacgatgagtgcgaggattttgtaaggatccaaaagattccgcgctcaaacagtgaag acaaaaggttttgtggaaaacaaacatttggaaagtatttgacggcagaccgtatcaccttactcttcaaaaagaaatcc aatgcaagtacaaatgcagagttcaaaatcaaatatcaagcttgtggcagcaagatgacggaaccaaatggcacaattac gacgtatcaatttagaccttcaaacgattcaaagcacttgcgatgtcactttacaatcgatcccggcacatcttatccta tacagttaatcataaaaaatgtaacgttcaacggaaacaaaaactgtacatctcatattcagatatccagcgggaaaatt tcaagcaatacgttgtgtaaaagcattgtttcggaaagctttctatttgacaccggacccataaacatcacatataatgg agtaggcaaagtgaatggaatgaaagccacttacaccataacatctaaagaaaaatttagccagcttttacaaggaagaa atggatcattttctccaaagttatatgatgaaaggtatgtaaataatgcggagtatatcttcaacatcacatcggggacc ggaggaggaaaacttataatgtgttttacagaggctgacttagattccaaatgccatgactatgtgatcatatcttctaa tgctatggatgcacctacgatactgtgtaaagagaacattacatctgaacacgtacagcagaaatcaacatcagccatgg tggtattcaaaacagacttcaagggtagtggacgaggattcacaggattttggtcaacttgtggaggattgttgacagaa acagagggcaccatatttcctcctagcagctgtaatccagtcttagcaaatttagaatgtcagtatgaaatagatgcaac tggaatagaagatgttttcatcacctatcaaatctggcacggtgtcaatcaaaatatcatatcacaagaaccacatcagt ctatgtggagagaaggacaatcggagaagaaagaaggcaaatggatcattaaaactaatacttctaccatagtacagtac ttagtttcaccgagaatctataatacaaggacggggaccatcaccctaaagtcaccaatggttgatgccatacaccctgg taaaaactgtacattcatcataaatgccgacgacatggatgtcatctacttcaacattaccataacaacaaggcattcaa actgctcagacgatttcgtatcgatcggcttttatccaacacaaagaactaaacttgaagttatggatatctgtgaccca agtactgtaaagactgagtggatgtcctttggacccgtcaacataaagtatgtctcagtcaatgatggacccgtcaacat aacgtatgtctcagtcaatgatgcacatacttcatttaaagttcattttcaagtcgagaaagacgagtcatcattctttg acgataccctaacagttggcaaagtgtcacagacacgtaggaacttttggaaaaggctgatgtcaagcgaactcttgtta ccggtgatagcttcggctatagggattgtcataattgcctttgcagttaccattgctattataaaatacagaaagaagaa gaagaatgcaaccaatgagcttgtatggctgacggacaaatccacgtcaacattagagcgaagttttgttcctttcttac cagaattggacaaactgagcttgaacaacgatgatcagagaggagaaatcatagtaggccttggtggttatgcagaggtc attttcccggaaaagaaagataaagtaaatcaagagaaacctgttttaaattcacaaacgaggaaagtctcgacgttttc attaaaaagaacgagtagtcttcaagtcgacactcctactgttcctaatgacaaaaatgatgaaatgcgagtaaagaacg aatattccactccttgggatgccaaaaacgaaaaagacaagatcattaaggtgatgtccttgcaatatcaaggggacaca tataacggtgatacagaaaatgtccagagttctgagtttcaatactgtcatacttcaggaactacatttgggattccttg tacagagggcatggataatgttaattcatga |
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Protein
| Protein ID | pfu_aug2.0_2724.1_15604.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2724.1_15604.t1 MGGGQGGSKEGWWWRPDMAFVYRCSYDTFLPYFERTIVGSGNDNMRVFILLIITTGLLAKDDSDIVEIFKNASGIIENPD EILGNKYYNFTIVPYMGSTIHLETKEFNLKDPDKYDECEDFVRIQKIPRSNSEDKRFCGKQTFGKYLTADRITLLFKKKS NASTNAEFKIKYQACGSKMTEPNGTITTYQFRPSNDSKHLRCHFTIDPGTSYPIQLIIKNVTFNGNKNCTSHIQISSGKI SSNTLCKSIVSESFLFDTGPINITYNGVGKVNGMKATYTITSKEKFSQLLQGRNGSFSPKLYDERYVNNAEYIFNITSGT GGGKLIMCFTEADLDSKCHDYVIISSNAMDAPTILCKENITSEHVQQKSTSAMVVFKTDFKGSGRGFTGFWSTCGGLLTE TEGTIFPPSSCNPVLANLECQYEIDATGIEDVFITYQIWHGVNQNIISQEPHQSMWREGQSEKKEGKWIIKTNTSTIVQY LVSPRIYNTRTGTITLKSPMVDAIHPGKNCTFIINADDMDVIYFNITITTRHSNCSDDFVSIGFYPTQRTKLEVMDICDP STVKTEWMSFGPVNIKYVSVNDGPVNITYVSVNDAHTSFKVHFQVEKDESSFFDDTLTVGKVSQTRRNFWKRLMSSELLL PVIASAIGIVIIAFAVTIAIIKYRKKKKNATNELVWLTDKSTSTLERSFVPFLPELDKLSLNNDDQRGEIIVGLGGYAEV IFPEKKDKVNQEKPVLNSQTRKVSTFSLKRTSSLQVDTPTVPNDKNDEMRVKNEYSTPWDAKNEKDKIIKVMSLQYQGDT YNGDTENVQSSEFQYCHTSGTTFGIPCTEGMDNVNS |
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