Gene
| Gene Model ID | pfu_aug2.0_2750.1_02243 |
|---|---|
| Locus | scaffold2750.1 : 8506 ... 67228 : + |
| To GenomeBrowser | scaffold2750.1:8506..67228 |
| Genes list of scaffold | scaffold2750.1 |
| Synonym | pfu_aug1.0_3503.1_23335 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| cubilin | GO:0044464 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2750.1_02243.t1 | 2 | 1 | CUB | 37 | 128 | 1.8e-24 | 85.9 | 1.1e-10 | 1.6e-06 | 28.1 |
| pfu_aug2.0_2750.1_02243.t1 | 2 | 2 | CUB | 162 | 271 | 1.8e-24 | 85.9 | 2.5e-19 | 3.7e-15 | 55.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2750.1_02243.t1 | gi|669272175|ref|XP_008628102.1| | PREDICTED: cubilin [Corvus brachyrhynchos] | 1.0e-17 |
| pfu_aug2.0_2750.1_02243.t1 | gi|727016529|ref|XP_010397546.1| | PREDICTED: cubilin [Corvus cornix cornix] | 1.0e-17 |
| pfu_aug2.0_2750.1_02243.t1 | gi|543346210|ref|XP_005518823.1| | PREDICTED: cubilin [Pseudopodoces humilis] | 8.0e-17 |
| pfu_aug2.0_2750.1_02243.t1 | gi|683900602|ref|XP_009084166.1| | PREDICTED: cubilin [Serinus canaria] | 2.0e-16 |
Transcript
| Transcript ID | pfu_aug2.0_2750.1_02243.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2750.1_02243.t1 atgagttttatcctcaatctatgtacattttatattctagcagcattaaaacttgttttcgtaaaaactcagtgtactgg aacaccttcatccatatcagtcaacgaggcgtctggatcatttagatacccagaatcgggggaatacagtgtgaatttga attgcgcatggttgattgaaagcgccagcggacaacctttattgtataaatttagtgatgtagacgtaccctgtactaat gacgccatcgatctctacgacggcagttcatcttcagcaagccaggtacaatctggtttgtgtacttcagtatcggcgtt tagcacaccaattgccacatcaagtactcaatttttgtatctcactttaacaactgacgggactgcaactcctggtaaag acaacggctttcaatttttagctgtcagttcatctgatcaatcattatgttcttcatcgggctcaaaacgatacctgtca gcatcaaccacttctaaagtcataactacgcctaatttccctaatacctatccaacaagccatacttgtgaatggatcat atcaccttcgagtagcacttcaacgttgacagtgcagttttcatttgtagatgttgaatcaagcggatcttcgtgttatg ataaagttacagtaaattatggggattcgttgtcaccactttcaagcgaattctgcggtaatgaggattatgcacccaat agagtgtttgataatgcaggcagtggtggaaacataactattctttttgaaagtgacagtgtacaagctgagcgtggatt tgtagctacatacatagaaacagagataactacctcagccaccaccgaagtttcagatatgtccacgaatgctggtagta ccgtaatgtctccatcaaacgtttcagatatgtccacaaatgccggtagtacagtaatgtctccatcaaacggtatgaac gtgtatgttgcgtatgccgctgtcaaaccagagggtgaaaataataacagtgaggagaaatcagatgacgcaaagatagc tggtggcgtagtcggtggtgtagtaggagtatctgctttatgtgcactaggatttgtcgggtataagaaaggtttgataa gcccgagtaggcttaagaaatttattactggaaacaaagtggacccagaaaaggcatatcccgaagatgtgaaacgtgac agagacgatgacgagccgccaaggaaaacggatagtaacgagaataaacaaggaagttcttcttcgttacaaactaaaaa tgaaactgccgaaaatgcggatagtgaactgcacgaaggatcagtgaaaatagaggagtcatcagaaacaaaatatgaaa acttaacaccggatagaaacgaataa |
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Protein
| Protein ID | pfu_aug2.0_2750.1_02243.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2750.1_02243.t1 MSFILNLCTFYILAALKLVFVKTQCTGTPSSISVNEASGSFRYPESGEYSVNLNCAWLIESASGQPLLYKFSDVDVPCTN DAIDLYDGSSSSASQVQSGLCTSVSAFSTPIATSSTQFLYLTLTTDGTATPGKDNGFQFLAVSSSDQSLCSSSGSKRYLS ASTTSKVITTPNFPNTYPTSHTCEWIISPSSSTSTLTVQFSFVDVESSGSSCYDKVTVNYGDSLSPLSSEFCGNEDYAPN RVFDNAGSGGNITILFESDSVQAERGFVATYIETEITTSATTEVSDMSTNAGSTVMSPSNVSDMSTNAGSTVMSPSNGMN VYVAYAAVKPEGENNNSEEKSDDAKIAGGVVGGVVGVSALCALGFVGYKKGLISPSRLKKFITGNKVDPEKAYPEDVKRD RDDDEPPRKTDSNENKQGSSSSLQTKNETAENADSELHEGSVKIEESSETKYENLTPDRNE |
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