Gene
| Gene Model ID | pfu_aug2.0_276.1_20537 |
|---|---|
| Locus | scaffold276.1 : 15716 ... 26029 : + |
| To GenomeBrowser | scaffold276.1:15716..26029 |
| Genes list of scaffold | scaffold276.1 |
| Synonym | pfu_aug1.0_47847.1_20003 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| glutamate receptor nmda 1- partial | GO:0001661 GO:0001967 GO:0001975 GO:0004972 GO:0005234 GO:0005262 GO:0005509 GO:0005516 GO:0005783 GO:0006874 GO:0007411 GO:0007616 GO:0008021 GO:0008344 GO:0008355 GO:0008542 GO:0009986 GO:0016594 GO:0016595 GO:0017146 GO:0018964 GO:0019233 GO:0019899 GO:0021586 GO:0021987 GO:0022843 GO:0030054 GO:0032590 GO:0034765 GO:0035176 GO:0035235 GO:0035249 GO:0035254 GO:0042165 GO:0043065 GO:0043083 GO:0043195 GO:0043197 GO:0043278 GO:0043524 GO:0043576 GO:0045211 GO:0045471 GO:0045944 GO:0046982 GO:0048013 GO:0048169 GO:0048511 GO:0048814 GO:0050770 GO:0051262 GO:0051592 GO:0051963 GO:0060076 GO:0060134 GO:0060179 GO:0060992 GO:0070588 GO:0071287 GO:0097481 GO:2000463 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_276.1_20537.t1 | 1 | 1 | Lig_chan | 18 | 284 | 7.9e-37 | 126.2 | 4.79999e-40 | 1.2e-36 | 125.6 |
| pfu_aug2.0_276.1_20537.t1 | 1 | 1 | SBP_bac_3 | 105 | 251 | 9.6e-11 | 41.3 | 5.7e-14 | 1.4e-10 | 40.8 |
| pfu_aug2.0_276.1_20537.t1 | 1 | 1 | CaM_bdg_C0 | 295 | 323 | 8.9e-16 | 57.4 | 6.5e-19 | 1.6e-15 | 56.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_276.1_20537.t1 | gi|676490394|ref|XP_009065255.1| | hypothetical protein LOTGIDRAFT_108357 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_276.1_20537.t1 | gi|33243903|gb|AAO46102.1| | NMDA-like receptor splice form [Aplysia californica] | 0.0 |
| pfu_aug2.0_276.1_20537.t1 | gi|32378818|gb|AAP80570.1| | NMDA-type glutamate receptor [Aplysia californica] | 0.0 |
| pfu_aug2.0_276.1_20537.t1 | gi|325197116|ref|NP_001191411.1| | NMDA-type glutamate receptor precursor [Aplysia californica] | 0.0 |
| pfu_aug2.0_276.1_20537.t1 | gi|585657045|ref|XP_006815779.1| | PREDICTED: glutamate receptor ionotropic, NMDA 1-like [Saccoglossus kowalevskii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_276.1_20537.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_276.1_20537.t1 atgactccaaagaattctaacttggcatcgttcctacagccgttccaggacacattatggatcctggttggtctgtccgt ccatgtggtggccctggtcctgtacctgttagaccgtttcagtccgttcggcaggtttaagttagccaagaataacgata cagaggaagatgccctaaatctgtccagtgctatgtggtttgcctggggagttctacttaatagtggtattggggaaggt actccgcgtagtttcagtgcacgtgtacttggtatgatatgggcgggctttgctatgatcattgtagcttcatacacagc taacttggcagctttcctagtgttggacagaccggaggcttctattactggaatagacgacgctaggctgaggaacccca atgagaagttccgatttgccacagtgaagaatagtgcggtggagatgtactttaaacgtcaggttgagttgtctaccatg tatagacagatggaatctcgtaactatgacactgctgatgtggccattaaagccgtacaatatgacgatctggaagcatt tatatgggactcttctcgcctggagtatgaagcggctaataattgttctctcatcacggctggtgagctgttcggaagat ctggactcggcatcggcctgcgcaagaaaagtccatggacagagaaaatctcaatggccatccttaagttacatgaaaat ggtacaatggagaaccttgataatagatggattctaaaggaatcagacgactgtccagactcgaatactgcccccgccac gcttggacttactaacatggctggggtgtttatgatggttgccggtggcatagtggctggagtattcctcatctttattg agattgcctataagtggcatagaggactgaaggagaaggaactagagctagccaggaatgctgctgacagatggagaggg aacattgagaggaggaaacgtctacgtgagacatggggatatataagggcaatgaaggagaagccagatgattctgccga gaatgtgaatgaaactaagacagatgaaactaaaaatctatga |
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Protein
| Protein ID | pfu_aug2.0_276.1_20537.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_276.1_20537.t1 MTPKNSNLASFLQPFQDTLWILVGLSVHVVALVLYLLDRFSPFGRFKLAKNNDTEEDALNLSSAMWFAWGVLLNSGIGEG TPRSFSARVLGMIWAGFAMIIVASYTANLAAFLVLDRPEASITGIDDARLRNPNEKFRFATVKNSAVEMYFKRQVELSTM YRQMESRNYDTADVAIKAVQYDDLEAFIWDSSRLEYEAANNCSLITAGELFGRSGLGIGLRKKSPWTEKISMAILKLHEN GTMENLDNRWILKESDDCPDSNTAPATLGLTNMAGVFMMVAGGIVAGVFLIFIEIAYKWHRGLKEKELELARNAADRWRG NIERRKRLRETWGYIRAMKEKPDDSAENVNETKTDETKNL |
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