Gene
| Gene Model ID | pfu_aug2.0_276.1_20544 |
|---|---|
| Locus | scaffold276.1 : 122136 ... 128121 : + |
| To GenomeBrowser | scaffold276.1:122136..128121 |
| Genes list of scaffold | scaffold276.1 |
| Synonym | pfu_aug1.0_157.1_00172 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| katanin p60 atpase-containing subunit a1 isoform x2 | GO:0001578 GO:0001764 GO:0005634 GO:0005811 GO:0005813 GO:0005886 GO:0008104 GO:0016887 GO:0030424 GO:0031122 GO:0045502 GO:0051013 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_276.1_20544.t1 | 2 | 1 | AAA | 2 | 51 | 3.2e-22 | 79.1 | 5.1e-18 | 3.6e-15 | 56.3 |
| pfu_aug2.0_276.1_20544.t1 | 2 | 2 | AAA | 63 | 94 | 3.2e-22 | 79.1 | 7.0e-07 | 0.00049 | 20.2 |
| pfu_aug2.0_276.1_20544.t1 | 1 | 1 | Vps4_C | 260 | 304 | 1.2e-08 | 34.6 | 3.7e-11 | 2.6e-08 | 33.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_276.1_20544.t1 | gi|568965407|ref|XP_006512801.1| | PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X1 [Mus musculus] | 0.0 |
| pfu_aug2.0_276.1_20544.t1 | gi|719757531|ref|XP_010215204.1| | PREDICTED: katanin p60 ATPase-containing subunit A1 [Tinamus guttatus] | 0.0 |
| pfu_aug2.0_276.1_20544.t1 | gi|700325390|ref|XP_009928837.1| | PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X2 [Haliaeetus albicilla] | 0.0 |
| pfu_aug2.0_276.1_20544.t1 | gi|729766167|ref|XP_010580217.1| | PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X2 [Haliaeetus leucocephalus] | 0.0 |
| pfu_aug2.0_276.1_20544.t1 | gi|705674309|ref|XP_010116253.1| | PREDICTED: katanin p60 ATPase-containing subunit A1 [Chlamydotis macqueenii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_276.1_20544.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_276.1_20544.t1 atggttgggccacctggtactggcaagacgatgctggcaaaagcagtggcaactgaatgtggcaccacattttttaatgt ttcttcgtcaactctaacctctaaataccacggcgagtccgaaaaattagtgcggattttgtttgagatggtaggtgtgg cgggtacccagtcagaggacggtgagagtaaaattgtcatggtactagctgctactaacttcccctgggacttggacgag gccctcaggaggagactggaaaagagaatttatatacccctacccacagctaaaggaagagaagatttactgaagatcaa cctaaaagaagtgaaactggctaaagatgtcaatctggctaaaatagctgagaagttagagggttactctggtgctgata tcactaatgtgtgcaggttagtaaaattagagggctactctggtgcagatatcactaatgtgtgcaggttagtaaagtta aagggttactctggtgcagatatcactaatgtgtccagattagtaatgtttgaggggtactctggtgcagatatcactaa tgtgtgcaggttagtaaagttagagggttattctggtgctgacatctctaaagtgtttaggttagtaaagttagaggggt actctggtgcagatatcactaatgtgtgcaggttagtaaagttagagggatactctggtgtagatattactaatgtatgc agggatgcagccatgatgtcattcagaagaagaatcagtggtctcggagccgaagaaatacggaagattccgaaggagga gttagagctccctccgacactggaggatttttttgctgccattcagaaagtgaacaagagtgtgtctcaagaagacctgg aaaagtataagaaatggatggaagaattcggctctgtgtag |
|
Protein
| Protein ID | pfu_aug2.0_276.1_20544.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_276.1_20544.t1 MVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYHGESEKLVRILFEMVGVAGTQSEDGESKIVMVLAATNFPWDLDE ALRRRLEKRIYIPLPTAKGREDLLKINLKEVKLAKDVNLAKIAEKLEGYSGADITNVCRLVKLEGYSGADITNVCRLVKL KGYSGADITNVSRLVMFEGYSGADITNVCRLVKLEGYSGADISKVFRLVKLEGYSGADITNVCRLVKLEGYSGVDITNVC RDAAMMSFRRRISGLGAEEIRKIPKEELELPPTLEDFFAAIQKVNKSVSQEDLEKYKKWMEEFGSV |
|