Gene
| Gene Model ID | pfu_aug2.0_276.1_20556 |
|---|---|
| Locus | scaffold276.1 : 330274 ... 385477 : + |
| To GenomeBrowser | scaffold276.1:330274..385477 |
| Genes list of scaffold | scaffold276.1 |
| Synonym | pfu_aug1.0_4988.1_67123 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| low-density lipoprotein receptor-related protein 4 | GO:0006468 GO:0007165 GO:0010604 GO:0031325 GO:0031399 GO:0042325 GO:0044765 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_276.1_20556.t1 | 2 | 1 | FXa_inhibition | 136 | 165 | 1.4e-15 | 57.1 | 4.7e-08 | 0.00014 | 21.9 |
| pfu_aug2.0_276.1_20556.t1 | 2 | 2 | FXa_inhibition | 303 | 339 | 1.4e-15 | 57.1 | 4.7e-14 | 1.4e-10 | 41.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_276.1_20556.t1 | gi|505851427|ref|XP_004619159.1| | 5.0e-14 | |
| pfu_aug2.0_276.1_20556.t1 | gi|671016987|ref|XP_008699312.1| | PREDICTED: low-density lipoprotein receptor-related protein 4 [Ursus maritimus] | 5.0e-13 |
| pfu_aug2.0_276.1_20556.t1 | gi|512914209|ref|XP_004928085.1| | 5.0e-10 | |
| pfu_aug2.0_276.1_20556.t1 | gi|591346132|ref|XP_007098316.1| | PREDICTED: pro-epidermal growth factor isoform X4 [Panthera tigris altaica] | 7.0e-10 |
Transcript
| Transcript ID | pfu_aug2.0_276.1_20556.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_276.1_20556.t1 atgatattttacatagaacaaggatataacttcaatattatggcatcaaccatgcttggggaaaatataaaggcaatagt ttataaagatttgattgtccctacatcgcttgacataaacgaaaacgaggggaaactattctggtatgatacacagaaaa gaactgtggaatattgtaactttgatggcagcgggagacatgttatagcagcactgacatcaccagttataggaatcaaa tatctaaaggcagacacaattattgcgtatacagaaaaagatatcatggctttggacttttcatcggaacattttcaact cagcatgctggcagagaattctaatgttgattcaatcgttattctgaaaaacaaaacagaaaattctgacaaatgtacaa tgctaggatgtgctcattactgtataacagaaatggattctgaaaaatgcatctgtacaaatggttattttctccattct gacggaaaacagtgcctaggtttagtattcaatacaaggttaaacattttctatgctttggtgaacggaagtgtcattgg tctgaattcaacaacaacgtctgtgattcgaaacgatgttcataatgccagacatcttactttgagcaacgaaaaagagc tctactggacaacggatggtggtatgtggagtgtggaagtagacggatctggtttccgtgtggaaatagttcttgatata tttacaactatagtagctgcttatcagaatctattctatttgcgtagttcactagataatcccacgataaaagcatatga atgggacaagaaaatatttgagttctctatcagcttttcggaaaaccatactattgaagaaatctctgtgatagactctg atacctcaaaagaagtgaaagacaaatgtaaggaagataatggaggttgtagccatatctgttatgttcgcgctaatgaa gatgtgaattgttcctgtaaaccaggatttatgctagcaaacgacatgcgttcatgcaataaagatatgttggaggatga ctttttaattatttttgacgaaggaaatacagctctttttcaaattgacataagaaatcacaatgtcacatcagttcttg gaggtttgaaagttgttagttttgacatggacccacattctttggaagtgtattacgtggaagagaatgactcgtttttc tctgtatttaaaatgaggaaaggaaaaatgtccactttcaatcttaaaggtatctttccacaacaacttgcgtttgacgg ccaaagacgaattctggtattttctgcatacaatggcacatctgtaaacttgcataaggtgaaaataacggacctttcaa acatcgtcacattgcatcataacatagccgtatcaagcattactttaagtattaaaaatgg |
|
Protein
| Protein ID | pfu_aug2.0_276.1_20556.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_276.1_20556.t1 MIFYIEQGYNFNIMASTMLGENIKAIVYKDLIVPTSLDINENEGKLFWYDTQKRTVEYCNFDGSGRHVIAALTSPVIGIK YLKADTIIAYTEKDIMALDFSSEHFQLSMLAENSNVDSIVILKNKTENSDKCTMLGCAHYCITEMDSEKCICTNGYFLHS DGKQCLGLVFNTRLNIFYALVNGSVIGLNSTTTSVIRNDVHNARHLTLSNEKELYWTTDGGMWSVEVDGSGFRVEIVLDI FTTIVAAYQNLFYLRSSLDNPTIKAYEWDKKIFEFSISFSENHTIEEISVIDSDTSKEVKDKCKEDNGGCSHICYVRANE DVNCSCKPGFMLANDMRSCNKDMLEDDFLIIFDEGNTALFQIDIRNHNVTSVLGGLKVVSFDMDPHSLEVYYVEENDSFF SVFKMRKGKMSTFNLKGIFPQQLAFDGQRRILVFSAYNGTSVNLHKVKITDLSNIVTLHHNIAVSSITLSIKN |
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