Gene
| Gene Model ID | pfu_aug2.0_2769.1_32293 |
|---|---|
| Locus | scaffold2769.1 : 1 ... 21655 : + |
| To GenomeBrowser | scaffold2769.1:1..21655 |
| Genes list of scaffold | scaffold2769.1 |
| Synonym | pfu_aug1.0_694.1_15190 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2769.1_32293.t1 | 4 | 1 | zf-RING_2 | 113 | 161 | 4.4e-09 | 36.0 | 3.8e-09 | 9.4e-06 | 25.3 |
| pfu_aug2.0_2769.1_32293.t1 | 5 | 1 | IBR | 117 | 144 | 8.5e-23 | 80.0 | 6.0 | 15000.0 | -4.6 |
| pfu_aug2.0_2769.1_32293.t1 | 5 | 2 | IBR | 152 | 168 | 8.5e-23 | 80.0 | 0.17 | 410.0 | 0.9 |
| pfu_aug2.0_2769.1_32293.t1 | 5 | 3 | IBR | 184 | 260 | 8.5e-23 | 80.0 | 4.6e-17 | 1.1e-13 | 50.7 |
| pfu_aug2.0_2769.1_32293.t1 | 4 | 2 | zf-RING_2 | 234 | 253 | 4.4e-09 | 36.0 | 0.0011 | 2.8 | 7.8 |
| pfu_aug2.0_2769.1_32293.t1 | 5 | 4 | IBR | 297 | 338 | 8.5e-23 | 80.0 | 2.7e-14 | 6.6e-11 | 41.9 |
| pfu_aug2.0_2769.1_32293.t1 | 4 | 3 | zf-RING_2 | 301 | 339 | 4.4e-09 | 36.0 | 7.4e-06 | 0.018 | 14.8 |
| pfu_aug2.0_2769.1_32293.t1 | 5 | 5 | IBR | 589 | 619 | 8.5e-23 | 80.0 | 0.18 | 440.0 | 0.8 |
| pfu_aug2.0_2769.1_32293.t1 | 4 | 4 | zf-RING_2 | 591 | 598 | 4.4e-09 | 36.0 | 3.0 | 7400.0 | -3.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2769.1_32293.t1 | gi|328712607|ref|XP_001945185.2| | PREDICTED: ankyrin repeat and IBR domain-containing protein 1-like [Acyrthosiphon pisum] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2769.1_32293.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2769.1_32293.t1 aatgttggatcagaggaggaagggacggaagacactgtctcctttatagaaacagaggactacagtggtcttagagccca ggacttacaggaggccaaggatcaactcctagtagaaacggcagacatgttaagtgtaccactctttactgctgaagctc tgctgagaaaccatgaatggtccagagaaacgttgctagaagcctggatgtccgaccccctttcctgctgtgataaatgt ggagttatcccccctcctagtgtattctgtgacaaaccccaagtacaagaatcactggtcagccattctaacactgaact caccttatctaccttaacgtgtgatatatgcacccagtcatacagaatgcagaaagagaacatagaaatttcctgtgaac ataaattctgtaaagattgctggaccgaatacctgaatttaaagattcaggagggcgacgcccaccatataacgtgcccc gcctaccaatgtgacatactggtgcctgtagagatgattgagagagtggtgtctagagatatggccagacggtatttaca gtttgatatcaaggcctttgtggatagtaaccctaacattaagtggtgcccttacccaggctgtgcccgggcagtcagac ttcctgaactggagaattctgggagaagtcaggtgattaggcgtccggaaccaactgatacatccagggcagtggattgt gggaacggccattatttctgttgggactgctcaggcgaggcccatgaacccagtagctgcgagaactggacaaaatggta caagaaagtggcggaaatcaaacctgaagaattgtccggtactgaggaagataccaaagcggcagctaattgtctgtggt tagtgaccaactctaaaccgtgtcctaactgtaaatctcctatacagaaaaacgaaggctgtaatcacatgaaatgctcc aagtgtaaacatgacttttgttgggtgtgtctggaccaatggaagcgacataattccagtacaggaggctattttaagtg taatcggtacgaggcagttaaagtcgttcaagaagaaacccagaaagctcagtcacaggcggaggagaagaatcagaaga tgcaggagctgaataagtttgtccactactacaccaggttcaagaatcatgaaaatagctacaagctagaagagccactt ttaagtacaactaaaaataaaatgctaaagttagcagaggctgtcactgacttagctacagccaactctgagacccagtt tgtagagcatgctgtacaacaattattgaaagctcggagagttctgaaatgttcatatgtctatggttactatctggatg gaccagggtacaagaaaattgtgtttgaatttatgcagacagagctagaagaatgtacagaaattctatcccagatggtc aacagattatatctccgcactccgcgaaagaaaataattgagcaagcccacattgtccaaagaaaacggcatgagttcat ccttgcaatatctaaaggcttagtccctcctgaaacgcctcctgggttaaggaaacatcgacgcagaaaatacagcatgg attttgaagatgatgagctaaggaaagccatcatggcttccatgcaggaagttgatctgtccaatccatggatcaaggac gcatctggtcgtcataccaacgtaatggccgtacttgattggccggacagtgatgattctgatatcgaagatgcttatac aatgcaacaaggtcggtgccaacacaaaaactgccgaaaaccacgagccaaaaatcctcgtacgggagagatacacgggt attgtagcaggcagtgtatgtatgatgacaaactggaaagtccagagcagtctgaaccagtacaagaagttataatggat gaacagatggacttactacgagccttagaaatgtcccgtctccaatatctacatgatcagggtattatatctggggagag gggatctattgctgctaggttggtataa |
|
Protein
| Protein ID | pfu_aug2.0_2769.1_32293.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2769.1_32293.t1 NVGSEEEGTEDTVSFIETEDYSGLRAQDLQEAKDQLLVETADMLSVPLFTAEALLRNHEWSRETLLEAWMSDPLSCCDKC GVIPPPSVFCDKPQVQESLVSHSNTELTLSTLTCDICTQSYRMQKENIEISCEHKFCKDCWTEYLNLKIQEGDAHHITCP AYQCDILVPVEMIERVVSRDMARRYLQFDIKAFVDSNPNIKWCPYPGCARAVRLPELENSGRSQVIRRPEPTDTSRAVDC GNGHYFCWDCSGEAHEPSSCENWTKWYKKVAEIKPEELSGTEEDTKAAANCLWLVTNSKPCPNCKSPIQKNEGCNHMKCS KCKHDFCWVCLDQWKRHNSSTGGYFKCNRYEAVKVVQEETQKAQSQAEEKNQKMQELNKFVHYYTRFKNHENSYKLEEPL LSTTKNKMLKLAEAVTDLATANSETQFVEHAVQQLLKARRVLKCSYVYGYYLDGPGYKKIVFEFMQTELEECTEILSQMV NRLYLRTPRKKIIEQAHIVQRKRHEFILAISKGLVPPETPPGLRKHRRRKYSMDFEDDELRKAIMASMQEVDLSNPWIKD ASGRHTNVMAVLDWPDSDDSDIEDAYTMQQGRCQHKNCRKPRAKNPRTGEIHGYCSRQCMYDDKLESPEQSEPVQEVIMD EQMDLLRALEMSRLQYLHDQGIISGERGSIAARLV |
|