Gene
| Gene Model ID | pfu_aug2.0_278.1_27150 |
|---|---|
| Locus | scaffold278.1 : 72676 ... 154044 : + |
| To GenomeBrowser | scaffold278.1:72676..154044 |
| Genes list of scaffold | scaffold278.1 |
| Synonym | pfu_aug1.0_300.1_50778 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_278.1_27150.t2 | 7 | 1 | RCC1_2 | 18 | 31 | 2.0e-31 | 106.8 | 0.0011 | 8.1 | 6.1 |
| pfu_aug2.0_278.1_27150.t2 | 6 | 1 | RCC1 | 20 | 72 | 0.0 | 182.5 | 3.5e-17 | 2.6e-13 | 49.9 |
| pfu_aug2.0_278.1_27150.t2 | 7 | 2 | RCC1_2 | 61 | 89 | 2.0e-31 | 106.8 | 2.4e-07 | 0.0018 | 17.8 |
| pfu_aug2.0_278.1_27150.t2 | 6 | 2 | RCC1 | 76 | 129 | 0.0 | 182.5 | 4.0e-16 | 3.0e-12 | 46.5 |
| pfu_aug2.0_278.1_27150.t2 | 7 | 3 | RCC1_2 | 117 | 146 | 2.0e-31 | 106.8 | 7.1e-09 | 5.3e-05 | 22.7 |
| pfu_aug2.0_278.1_27150.t2 | 6 | 3 | RCC1 | 138 | 180 | 0.0 | 182.5 | 2.5e-06 | 0.019 | 15.1 |
| pfu_aug2.0_278.1_27150.t2 | 7 | 4 | RCC1_2 | 170 | 192 | 2.0e-31 | 106.8 | 6.3e-10 | 4.6e-06 | 26.0 |
| pfu_aug2.0_278.1_27150.t2 | 6 | 4 | RCC1 | 183 | 228 | 0.0 | 182.5 | 1.2e-07 | 0.00091 | 19.3 |
| pfu_aug2.0_278.1_27150.t2 | 7 | 5 | RCC1_2 | 217 | 244 | 2.0e-31 | 106.8 | 4.3e-10 | 3.2e-06 | 26.6 |
| pfu_aug2.0_278.1_27150.t2 | 6 | 5 | RCC1 | 231 | 282 | 0.0 | 182.5 | 2.2e-10 | 1.6e-06 | 28.1 |
| pfu_aug2.0_278.1_27150.t2 | 7 | 6 | RCC1_2 | 269 | 296 | 2.0e-31 | 106.8 | 1.1e-08 | 8.3e-05 | 22.0 |
| pfu_aug2.0_278.1_27150.t2 | 6 | 6 | RCC1 | 285 | 334 | 0.0 | 182.5 | 5.1e-08 | 0.00037 | 20.6 |
| pfu_aug2.0_278.1_27150.t2 | 7 | 7 | RCC1_2 | 321 | 335 | 2.0e-31 | 106.8 | 0.009 | 67.0 | 3.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_278.1_27150.t2 | gi|585646164|ref|XP_006811681.1| | PREDICTED: X-linked retinitis pigmentosa GTPase regulator-like [Saccoglossus kowalevskii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_278.1_27150.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_278.1_27150.t1 atggacactcacctgagccgtaggctcaagttaggggtagattcaactggcacagaattagaaccaaggagagtaactct attcgaaaaccaagcaaagggcggcaatcctcctgtggcaggggtagcttgcggagggcgccacacaatggtctggttga ccaatggaaatgtcttcagttttggcaataattactacgctcagctaggttatgattttagggaggaaacatacaaggaa aatcagacgaaaccaacattgctgaagtttctagcatatcgccctgttgtacaagtttcttgtggagagaaacactcagt gttcagatttcaagatggtgccatagcttgtgttggctgcaatgcaaacggacagataggcatgggatgtcgggatgaag ctgttgttccaaaagtgctagaaatggacagaccaatcagatttgttgcatcaggagcaaatcataacttggctattaca gataacggtgaggtatacgtgtggggatatggcaaggcaattggtaacaagaaatctgacgttttgtccccggaactgat acaaataaatactcatagcatctggcaggtggcaggagggtcatctcatagtgtttttcttacagagtccgggacagtat tgacattggggagtggtccagatggtcagcttggcttcggaaacaatgtttatttcttgcatcgacctagaaaaattcgc cacgcccacctcaatagaaaaattgtaaaaatttgtgccggagagtcgtttagcgcagcaattacagaaaatggagactt gtttatgtggggaaagaacagtcacataatccttccagacaaaccaccttcttatagaatttggaatccagttcttataa acaaaagaaccaaaccaatcaaatctttgtattgcggatcctggcatgcaattgccatcacaggatttccagatccccta accaataattacagtgatacagaagattcagatcaggagatggacacaagggcgatgaacggccatcatcagaatggtga cataaaagatggcgacggatcctctgagagcgatggagactttgctgatttgcctcaaattgtctttaaaaaagatcaag gccttcaagaaaaggagggaacaaaactgactattgctgaattctatgctcaagaagataatgagacaaattatggacct tcagctgctggaggcaaatcacatggaaaggaagaccaatcagagtatcgcctacagattcctcctgatgacactagtta tagtcccaatgataaacccgagagtgctaaatcacgtatcatagtacaagtccctacccctaacgtcgtcaatgttgcta cctcacccattcctttcagcagctcagattctggaagtgagagagcctctagtccacaccatactcttgccaaacaaaat gtacaaaaggacaatagtgccaattataaaaacagtttccaacccagtgccaaaacaacaaaatttgaagaatctccttt ggtctacagagatgaaaggagttcatatcctgctaaaagtattccttattcctatgagagggaaaagtcatgtatatcaa atcatagtcatcctgctcccatcgtacaagttagtaaaaggactgctgatatgttttccttacctcgtgaaaatacgaat ttcacgagtcgccagatagatttgactgaagtagagtatgctcgagcagtgaactcaagtagagctcatgaaaaacaatt ctgggtgaataaattaaatgaagcacgatctgaatgtaacactgctcccaatcccctttctttggtaccacaagatgaat tcatagcaatagacagtggtgctaataaaactgcaaaatactcagaaagcgtggttagtagatatggtagatacagcgag gcctccgtaataaaccttggaagagtagaaggactgcttgatggtacacctacaaaaatgacaagaagctctatgtcaga ctatgggaagcagttcgggacacctgaaatattagaggaggctagaagagcggccaaattgcctcctagaggaaaaccaa ccagtagtattccaagaaagaaaacggaagcgaactttgcacgtccttcgcagtctggctatattcttcggaggaagtta cagatatctaggagtgatacaattgtggcccctttgaaaggaccaataatcaatgccaaaatgaaaaatctcaaactgaa cccacttgaacgatatgcaagtgttcacaatccactcgcgggatctaaaatggtggagaagaagtcaaaagccggtatcc agacacctagaaacgtaagcattcctggaggacgatcatacaccaatcaggaagaagatttttacgttcaaggtcagaca ggagtcagtaaaatggctatgtactcaagtgccgcatcctggagatctagaagtgattttgatcgggtacgagcgtcgaa cttgagctcggcttcgccagtctattccactgtgtccttcgttgaaagtgctgacagtaaagggagagaaacaaatggca aaaaagaaactagaaaacccacagatagtgacaaagagaacgttccgaaaggggacaaatcacagagtacgatggagaga acaccagactcaaggtcaggtggaaggggcgatataggtagtagaacaagcgataaaagtatctcaaaaactgtaggtga taagtcagaccagggtcaaattaataataggacttctaatcagagaaagggatttggtatgcataggggtaaatggcaaa cgtccttaccacagaccggctag |
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| Transcript ID | pfu_aug2.0_278.1_27150.t2 |
| Definition | - |
>pfu_aug2.0_278.1_27150.t2 atgttccagggccttaactctgatagaaattgggtattatcttttccagattctgacgaaatctttgcatggggaaacgg taacaatggacagttaggggtagattcaactggcacagaattagaaccaaggagagtaactctattcgaaaaccaagcaa agggcggcaatcctcctgtggcaggggtagcttgcggagggcgccacacaatggtctggttgaccaatggaaatgtcttc agttttggcaataattactacgctcagctaggttatgattttagggaggaaacatacaaggaaaatcagacgaaaccaac attgctgaagtttctagcatatcgccctgttgtacaagtttcttgtggagagaaacactcagtgttcagatttcaagatg gtgccatagcttgtgttggctgcaatgcaaacggacagataggcatgggatgtcgggatgaagctgttgttccaaaagtg ctagaaatggacagaccaatcagatttgttgcatcaggagcaaatcataacttggctattacagataacggtgaggtata cgtgtggggatatggcaaggcaattggtaacaagaaatctgacgttttgtccccggaactgatacaaataaatactcata gcatctggcaggtggcaggagggtcatctcatagtgtttttcttacagagtccgggacagtattgacattggggagtggt ccagatggtcagcttggcttcggaaacaatgtttatttcttgcatcgacctagaaaaattcgccacgcccacctcaatag aaaaattgtaaaaatttgtgccggagagtcgtttagcgcagcaattacagaaaatggagacttgtttatgtggggaaaga acagtcacataatccttccagacaaaccaccttcttatagaatttggaatccagttcttataaacaaaagaaccaaacca atcaaatctttgtattgcggatcctggcatgcaattgccatcacaggatttccagatcccctaaccaataattacagtga tacagaagattcagatcaggagatggacacaagggcgatgaacggccatcatcagaatggtgacataaaagatggcgacg gatcctctgagagcgatggagactttgctgatttgcctcaaattgtctttaaaaaagatcaaggccttcaagaaaaggag ggaacaaaactgactattgctgaattctatgctcaagaagataatgagacaaattatggaccttcagctgctggaggcaa atcacatggaaaggaagaccaatcagagtatcgcctacagattcctcctgatgacactagttatagtcccaatgataaac ccgagagtgctaaatcacgtatcatagtacaagtccctacccctaacgtcgtcaatgttgctacctcacccattcctttc agcagctcagattctggaagtgagagagcctctagtccacaccatactcttgccaaacaaaatgtacaaaaggacaatag tgccaattataaaaacagtttccaacccagtgccaaaacaacaaaatttgaagaatctcctttggtctacagagatgaaa ggagttcatatcctgctaaaagtattccttattcctatgagagggaaaagtcatgtatatcaaatcatagtcatcctgct cccatcgtacaagttagtaaaaggactgctgatatgttttccttacctcgtgaaaatacgaatttcacgagtcgccagat agatttgactgaagtagagtatgctcgagcagtgaactcaagtagagctcatgaaaaacaattctgggtgaataaattaa atgaagcacgatctgaatgtaacactgctcccaatcccctttctttggtaccacaagatgaattcatagcaatagacagt ggtgctaataaaactgcaaaatactcagaaagcgtggttagtagatatggtagatacagcgaggcctccgtaataaacct tggaagagtagaaggactgcttgatggtacacctacaaaaatgacaagaagctctatgtcagactatgggaagcagttcg ggacacctgaaatattagaggaggctagaagagcggccaaattgcctcctagaggaaaaccaaccagtagtattccaaga aagaaaacggaagcgaactttgcattacagatatctaggagtgatacaattgtggcccctttgaaaggaccaataatcaa tgccaaaatgaaaaatctcaaactgaacccacttgaacgatatgcaagtgttcacaatccactcgcgggatctaaaatgg tggagaagaagtcaaaagccggtatccagacacctagaaacgtaagcattcctggaggacgatcatacaccaatcaggaa gaagatttttacgttcaaggtcagacaggagtcagtaaaatggctatgtactcaagtgccgcatcctggagatctagaag tgattttgatcgggtacgagcgtcgaacttgagctcggcttcgccagtctattccactgtgtccttcgttgaaagtgctg acagtaaagggagagaaacaaatggcaaaaaagaaactagaaaacccacagatagtgacaaagagaacgttccgaaaggg gacaaatcacagagtacgatggagagaacaccagactcaaggtcaggtggaaggggcgatataggtagtagaacaagcga taaaagtatctcaaaaactgtaggtgataagtcagaccagggtcaaattaataataggacttctaatcagagaaagggat ttggtatgcataggggtaaatggcaaacgtccttaccacagaccggctag |
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Protein
| Protein ID | pfu_aug2.0_278.1_27150.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_278.1_27150.t1 MDTHLSRRLKLGVDSTGTELEPRRVTLFENQAKGGNPPVAGVACGGRHTMVWLTNGNVFSFGNNYYAQLGYDFREETYKE NQTKPTLLKFLAYRPVVQVSCGEKHSVFRFQDGAIACVGCNANGQIGMGCRDEAVVPKVLEMDRPIRFVASGANHNLAIT DNGEVYVWGYGKAIGNKKSDVLSPELIQINTHSIWQVAGGSSHSVFLTESGTVLTLGSGPDGQLGFGNNVYFLHRPRKIR HAHLNRKIVKICAGESFSAAITENGDLFMWGKNSHIILPDKPPSYRIWNPVLINKRTKPIKSLYCGSWHAIAITGFPDPL TNNYSDTEDSDQEMDTRAMNGHHQNGDIKDGDGSSESDGDFADLPQIVFKKDQGLQEKEGTKLTIAEFYAQEDNETNYGP SAAGGKSHGKEDQSEYRLQIPPDDTSYSPNDKPESAKSRIIVQVPTPNVVNVATSPIPFSSSDSGSERASSPHHTLAKQN VQKDNSANYKNSFQPSAKTTKFEESPLVYRDERSSYPAKSIPYSYEREKSCISNHSHPAPIVQVSKRTADMFSLPRENTN FTSRQIDLTEVEYARAVNSSRAHEKQFWVNKLNEARSECNTAPNPLSLVPQDEFIAIDSGANKTAKYSESVVSRYGRYSE ASVINLGRVEGLLDGTPTKMTRSSMSDYGKQFGTPEILEEARRAAKLPPRGKPTSSIPRKKTEANFARPSQSGYILRRKL QISRSDTIVAPLKGPIINAKMKNLKLNPLERYASVHNPLAGSKMVEKKSKAGIQTPRNVSIPGGRSYTNQEEDFYVQGQT GVSKMAMYSSAASWRSRSDFDRVRASNLSSASPVYSTVSFVESADSKGRETNGKKETRKPTDSDKENVPKGDKSQSTMER TPDSRSGGRGDIGSRTSDKSISKTVGDKSDQGQINNRTSNQRKGFGMHRGKWQTSLPQTG |
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| Protein ID | pfu_aug2.0_278.1_27150.t2 |
| Definition | - |
>pfu_aug2.0_278.1_27150.t2 MFQGLNSDRNWVLSFPDSDEIFAWGNGNNGQLGVDSTGTELEPRRVTLFENQAKGGNPPVAGVACGGRHTMVWLTNGNVF SFGNNYYAQLGYDFREETYKENQTKPTLLKFLAYRPVVQVSCGEKHSVFRFQDGAIACVGCNANGQIGMGCRDEAVVPKV LEMDRPIRFVASGANHNLAITDNGEVYVWGYGKAIGNKKSDVLSPELIQINTHSIWQVAGGSSHSVFLTESGTVLTLGSG PDGQLGFGNNVYFLHRPRKIRHAHLNRKIVKICAGESFSAAITENGDLFMWGKNSHIILPDKPPSYRIWNPVLINKRTKP IKSLYCGSWHAIAITGFPDPLTNNYSDTEDSDQEMDTRAMNGHHQNGDIKDGDGSSESDGDFADLPQIVFKKDQGLQEKE GTKLTIAEFYAQEDNETNYGPSAAGGKSHGKEDQSEYRLQIPPDDTSYSPNDKPESAKSRIIVQVPTPNVVNVATSPIPF SSSDSGSERASSPHHTLAKQNVQKDNSANYKNSFQPSAKTTKFEESPLVYRDERSSYPAKSIPYSYEREKSCISNHSHPA PIVQVSKRTADMFSLPRENTNFTSRQIDLTEVEYARAVNSSRAHEKQFWVNKLNEARSECNTAPNPLSLVPQDEFIAIDS GANKTAKYSESVVSRYGRYSEASVINLGRVEGLLDGTPTKMTRSSMSDYGKQFGTPEILEEARRAAKLPPRGKPTSSIPR KKTEANFALQISRSDTIVAPLKGPIINAKMKNLKLNPLERYASVHNPLAGSKMVEKKSKAGIQTPRNVSIPGGRSYTNQE EDFYVQGQTGVSKMAMYSSAASWRSRSDFDRVRASNLSSASPVYSTVSFVESADSKGRETNGKKETRKPTDSDKENVPKG DKSQSTMERTPDSRSGGRGDIGSRTSDKSISKTVGDKSDQGQINNRTSNQRKGFGMHRGKWQTSLPQTG |
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