Gene
| Gene Model ID | pfu_aug2.0_278.1_27151 |
|---|---|
| Locus | scaffold278.1 : 186940 ... 190114 : + |
| To GenomeBrowser | scaffold278.1:186940..190114 |
| Genes list of scaffold | scaffold278.1 |
| Synonym | pfu_aug1.0_588.1_07574 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_278.1_27151.t1 | 1 | 1 | zf-C4 | 83 | 151 | 3.5e-31 | 107.2 | 1.6e-34 | 5.9e-31 | 106.5 |
| pfu_aug2.0_278.1_27151.t1 | 1 | 1 | Hormone_recep | 199 | 329 | 5.5e-25 | 87.6 | 2.1e-28 | 7.8e-25 | 87.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_278.1_27151.t1 | gi|20589472|ref|NP_571255.1| | nuclear receptor subfamily 2 group F member 1-A [Danio rerio] | 0.0 |
| pfu_aug2.0_278.1_27151.t1 | gi|551504038|ref|XP_005803556.1| | PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like isoform X2 [Xiphophorus maculatus] | 0.0 |
| pfu_aug2.0_278.1_27151.t1 | gi|742209358|ref|XP_010895910.1| | PREDICTED: COUP transcription factor 1 isoform X1 [Esox lucius] | 0.0 |
| pfu_aug2.0_278.1_27151.t1 | gi|736220006|ref|XP_010779603.1| | PREDICTED: COUP transcription factor 1 isoform X1 [Notothenia coriiceps] | 0.0 |
| pfu_aug2.0_278.1_27151.t1 | gi|410923623|ref|XP_003975281.1| | PREDICTED: COUP transcription factor 1 isoform X1 [Takifugu rubripes] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_278.1_27151.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_278.1_27151.t1 atggcgctaaatgcaactccgccgaacgcagtgaacccctggcctcgggatccggtagaagaattgggagccacaccacc aatggcaccacaagcaccggcaccaccacaaccaacccctacagcacaatctcccacccaggctcaacctcccccgcccc ctccacagtcatcacaaccaacaacgaatggaaccgtctccacccccaatggaaccgcatccccagaggccaaacagcaa cacatagagtgtgtggtgtgcggggacaaaagttcgggaaaacattatggtcaattcacttgtgaaggatgtaaaagttt tttcaagcgttctgtgaggagaaatttaacatatacatgtcgaggaaatagacagtgccccatcgaccagcatcatcgaa atcaatgtcaatactgcagacttaaaaagtgcttaaaaatgggaatgcgacgggaagctgtacaaagagggcgtgttcct cctacccagcatccttttcctggacaagttacttgggcaaatggcgacgtattaaatgggcatacatatctctccagctt tatttccatgttactgagggccgagccctaccccacttcccggtatggccaatgtatgcagcccaacaacattatgggca ttgaaaacatctgtgaactggcagcaaggcttctcttcagcgctgtagaatgggcaaggaatattccattttttccagaa cttcaaataactgaccaagttgctctactccggctaagctggagtgagctttttgttctgaacgcggcccagtgctccat gcctctccacgtggcaccacttttggcggcagccgggctccacgccagcccaatggccgcggatagggttgtggcattca tggaccacattaggattttccaggaacaagtcgagaagttaaagaatttgcatgtagattcagcggagtatagctgcatg aaggccatcgtgctattcagttcaggtttgtacattttatgtcctcatattttactttaa |
|
Protein
| Protein ID | pfu_aug2.0_278.1_27151.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_278.1_27151.t1 MALNATPPNAVNPWPRDPVEELGATPPMAPQAPAPPQPTPTAQSPTQAQPPPPPPQSSQPTTNGTVSTPNGTASPEAKQQ HIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRGNRQCPIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVP PTQHPFPGQVTWANGDVLNGHTYLSSFISMLLRAEPYPTSRYGQCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPE LQITDQVALLRLSWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKNLHVDSAEYSCM KAIVLFSSGLYILCPHILL |
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