Gene
| Gene Model ID | pfu_aug2.0_278.1_27153 |
|---|---|
| Locus | scaffold278.1 : 282141 ... 293069 : - |
| To GenomeBrowser | scaffold278.1:282141..293069 |
| Genes list of scaffold | scaffold278.1 |
| Synonym | pfu_aug1.0_6203.1_16873 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_278.1_27153.t1 | 2 | 1 | Ribosomal_L22 | 17 | 54 | 2.4e-10 | 40.2 | 9.8e-11 | 7.2e-07 | 29.1 |
| pfu_aug2.0_278.1_27153.t1 | 2 | 2 | Ribosomal_L22 | 65 | 95 | 2.4e-10 | 40.2 | 7.8e-05 | 0.58 | 10.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_278.1_27153.t1 | gi|470636834|ref|XP_004332219.1| | PREDICTED: LOW QUALITY PROTEIN: ribosomal protein L17 [Tursiops truncatus] | 4.0e-38 |
| pfu_aug2.0_278.1_27153.t1 | gi|114145792|ref|NP_001041363.1| | Ribosomal_L22 domain containing protein RGD1359290 [Rattus norvegicus] | 8.0e-38 |
| pfu_aug2.0_278.1_27153.t1 | gi|291231138|ref|XP_002735520.1| | PREDICTED: 60S ribosomal protein L17-like isoform 1 [Saccoglossus kowalevskii] | 5.0e-37 |
| pfu_aug2.0_278.1_27153.t1 | gi|242001836|ref|XP_002435561.1| | ribosomal protein L17, putative [Ixodes scapularis] | 1.0e-36 |
| pfu_aug2.0_278.1_27153.t1 | gi|524894931|ref|XP_005103955.1| | PREDICTED: 60S ribosomal protein L17-like isoform X2 [Aplysia californica] | 2.0e-36 |
Transcript
| Transcript ID | pfu_aug2.0_278.1_27153.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_278.1_27153.t1 atggttcgctacgctactgaaccagacaacccaagtaaatctgcaaaagcaaggggctcatacttgcgtgtccactttaa gaacacacgtgagacagcccaggccatcaaacgtatgcacattaaacgtgccaccagatacctgaagaatgttgttgcta agaaagagattgttccgttcagaagattcaatggtacaataggaagaaaagcacaggccaaagcatttaatacaacacaa gcttacatgagcagcccctgtcatattgaggttatccttgccgagagggaacaggccgtgcctcgccctggggccacatc agacgatgaaccagtcaaaaagaaggtttcacagaagaagcttaaacgacaaaaaatgatgatgagagactaa |
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Protein
| Protein ID | pfu_aug2.0_278.1_27153.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_278.1_27153.t1 MVRYATEPDNPSKSAKARGSYLRVHFKNTRETAQAIKRMHIKRATRYLKNVVAKKEIVPFRRFNGTIGRKAQAKAFNTTQ AYMSSPCHIEVILAEREQAVPRPGATSDDEPVKKKVSQKKLKRQKMMMRD |
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