Gene
| Gene Model ID | pfu_aug2.0_2787.1_25534 |
|---|---|
| Locus | scaffold2787.1 : 21443 ... 51225 : - |
| To GenomeBrowser | scaffold2787.1:21443..51225 |
| Genes list of scaffold | scaffold2787.1 |
| Synonym | pfu_aug1.0_4143.1_37810 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| mms19 nucleotide excision repair protein homolog | GO:0005856 GO:0006351 GO:0044446 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2787.1_25534.t1 | 3 | 1 | MMS19_N | 40 | 300 | 0.0 | 301.3 | 0.0 | 0.0 | 295.7 |
| pfu_aug2.0_2787.1_25534.t1 | 3 | 1 | MMS19_C | 249 | 273 | 0.0 | 300.3 | 0.15 | 370.0 | -0.5 |
| pfu_aug2.0_2787.1_25534.t1 | 3 | 2 | MMS19_C | 383 | 434 | 0.0 | 300.3 | 0.086 | 210.0 | 0.3 |
| pfu_aug2.0_2787.1_25534.t1 | 3 | 2 | MMS19_N | 396 | 482 | 0.0 | 301.3 | 0.042 | 100.0 | 1.9 |
| pfu_aug2.0_2787.1_25534.t1 | 3 | 3 | MMS19_C | 514 | 952 | 0.0 | 300.3 | 0.0 | 0.0 | 300.3 |
| pfu_aug2.0_2787.1_25534.t1 | 3 | 3 | MMS19_N | 729 | 756 | 0.0 | 301.3 | 0.08 | 200.0 | 1.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2787.1_25534.t1 | gi|260787102|ref|XP_002588594.1| | hypothetical protein BRAFLDRAFT_131757 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_2787.1_25534.t1 | gi|395501796|ref|XP_003755276.1| | PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Sarcophilus harrisii] | 0.0 |
| pfu_aug2.0_2787.1_25534.t1 | gi|507572751|ref|XP_004669964.1| | PREDICTED: LOW QUALITY PROTEIN: MMS19 nucleotide excision repair protein homolog [Jaculus jaculus] | 0.0 |
| pfu_aug2.0_2787.1_25534.t1 | gi|148232088|ref|NP_001087156.1| | MMS19 nucleotide excision repair protein homolog [Xenopus laevis] | 0.0 |
| pfu_aug2.0_2787.1_25534.t1 | gi|674048161|ref|XP_008830197.1| | PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Nannospalax galili] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2787.1_25534.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2787.1_25534.t1 atgtctgcgcccatttggcaagtggcaatcgacaacttcgtcgacaatgatgtttcagaactttcatcgatagttaacgg tttgctcagcagaaatccatcactgttggacataatagagtatgcagggaagcacttgactaatgagagccccaccatta gatcacgagttatcagacttcttgctgacgttctacaccagattcctgtagatcttctctccacagatgaagtaaaggta ctggtcgtatacttctgtgagagattgctagatcatcattcggttcaacctccggctctcaatggacttctcgcactgtc tggctttgaaaatcttcctgagggatgtgcagatggaatttgtcgaagcatatttcaaaatgttcagactcaaactctgg ctcaggatgatcgcagaattgtctacacaatattttctactctcttagattccaaattatcagagctgcagaaaatggaa ggtgattttgtgcttggatacatacaggccatggatgctgagaaagatcctcgtaatcttactctcgcctttcattgtgc tagaattgtcatcaagaattttccgttaggtgtgtttgtggaggacatgtttgaggtggtttcttgttacttccccattg acttcactcctcctgccaatgatccacatggtataacgagagatgaccttatttctggactccgatcttgtcttatagcc tctcctaagtttggtactctgtgtttaccactcctcctggaaaaactgacgtcagatatccagagtgcaaagtttgattc cttacagactttgcgtgcaggtgccgcagtgtttggtccagagtgtttaaaagagtaccaaggctcccttttcagatgtg ttaaacaagaggtcttttcctccggcagtagtgagttagaagaggccgccctacatgcacttacatctatatcagttact ttgtctcctacattaggaataagcacagttgactctgatgttgatgaattcattaaagaagtgtttcaagatataggtag gcacttgaaggatgaggacctgcggttgtttgtgccgacctgtcgtttattacgagccatacaggcgggttctggacacg catgtgccgtaatattgtcacgtgttgtaccacttctggtagatatgtataacagaaattctgtgtcaacaaaaaggaaa aaggtgctagagatgcttctttcatttttagagaaaacaacatattttacagagtcaaaagttgagaaagtcctcctgga gcatgcttcagatatttcctccattttgatgttggcggcctcggacactgaccagtctctgtcggccgtagcgatacacg gcttggcatcggtactgtccatcaaagtactcagctccaaccaggatagggctgtactactctcattgttatcacagaaa accttcagtgattccgcagaaatcaggaagagttgtgaagctcccatcaaagttttggcatcaacagattgtgatatgat tcaaacagaactgctgcctaaattatatgaacagatgaagtcagataagatggatgttgatggcgataataatgagtcta cgcatgctgtgtttagaatgctgtctataatcgcttgttctagtaaccttaaacttcttagagaaatattacaacatctt acatcatacctacatgttttatcaaaagagagataccagtctgacaatgcagtgttacacaagtcaatatgtatatgtga gtgtatgtgtgatatagcgagtcactgtgtcaaagacccagaaactctgagcctcgtgtatgaactgacggtaccggaga tatacacgttgttagttgttggtgctataggaagtaataaagatggctgctgtatgtgtcatgataaagtcctggaatgt acggagaatctagtacgactcgtcatgtgtaatgtcgtccaatcaaaagttgctgagatgtgtgtgaagatggatgactt attccttaaaaatgatacacaaatgatacaggaagatacagacgtagtagagaaatgggctccactgaagccttcatctc catggcaacagactcagctgatttccatggcaacacctgtgatatgttcctgcccaaaacaggttaaccttcctaatgtg gacagatacttagaactacttactgagatgtccttacagagtacacatggattgaccagacacaagtctgtaaaatgtat agctggtttgatcaacaagtatcctgatggagaacagctctctctcttcttaaaatcaagacaacatcattttgatcaag taatgaatgttgctcaaaattcaagtgagaaagaccataatctgaatctatggatctgggtcactaaagctctggttctt cgaggacatgcggatgggaaatcttttttcacaaagttgatagacatgctgaatgatgtagaagctggtgaacaagcagc agagggagttcatataatcttgaatgactttccagacatactgaacaaggcgatgcatgcgaacataaggatgatgtata aacagaggttgttcacagagaatgttcatgcgttggtacaaggctttcatcaagctatagagggtacaaagaagaatttc ctgatggcattatcatatatgttgaaaacacttccaaaacaagttctagtcacagaactgccaccgcttttcccactcct agtgcagtccctgctttgtaaccacacagaactacagttgtctacaatgactactctgttagacctgattagtgatgctc cagaaatcatatcaaagaatatagattccatcgttaatcaacttttaaagcttagcaattaccaaccgtccatgaaaatt aggattgctgctatcaggtgtttaaacaaactgtcaactttgccggcactcttggttctgccataccgcacacaggttat agcaagtcttgaaccaagattggatgataaaaaacgactggtgaggaaggaagctgttcaaactagatgtttgtggtatc tgattggacagccaggaaaatga |
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Protein
| Protein ID | pfu_aug2.0_2787.1_25534.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2787.1_25534.t1 MSAPIWQVAIDNFVDNDVSELSSIVNGLLSRNPSLLDIIEYAGKHLTNESPTIRSRVIRLLADVLHQIPVDLLSTDEVKV LVVYFCERLLDHHSVQPPALNGLLALSGFENLPEGCADGICRSIFQNVQTQTLAQDDRRIVYTIFSTLLDSKLSELQKME GDFVLGYIQAMDAEKDPRNLTLAFHCARIVIKNFPLGVFVEDMFEVVSCYFPIDFTPPANDPHGITRDDLISGLRSCLIA SPKFGTLCLPLLLEKLTSDIQSAKFDSLQTLRAGAAVFGPECLKEYQGSLFRCVKQEVFSSGSSELEEAALHALTSISVT LSPTLGISTVDSDVDEFIKEVFQDIGRHLKDEDLRLFVPTCRLLRAIQAGSGHACAVILSRVVPLLVDMYNRNSVSTKRK KVLEMLLSFLEKTTYFTESKVEKVLLEHASDISSILMLAASDTDQSLSAVAIHGLASVLSIKVLSSNQDRAVLLSLLSQK TFSDSAEIRKSCEAPIKVLASTDCDMIQTELLPKLYEQMKSDKMDVDGDNNESTHAVFRMLSIIACSSNLKLLREILQHL TSYLHVLSKERYQSDNAVLHKSICICECMCDIASHCVKDPETLSLVYELTVPEIYTLLVVGAIGSNKDGCCMCHDKVLEC TENLVRLVMCNVVQSKVAEMCVKMDDLFLKNDTQMIQEDTDVVEKWAPLKPSSPWQQTQLISMATPVICSCPKQVNLPNV DRYLELLTEMSLQSTHGLTRHKSVKCIAGLINKYPDGEQLSLFLKSRQHHFDQVMNVAQNSSEKDHNLNLWIWVTKALVL RGHADGKSFFTKLIDMLNDVEAGEQAAEGVHIILNDFPDILNKAMHANIRMMYKQRLFTENVHALVQGFHQAIEGTKKNF LMALSYMLKTLPKQVLVTELPPLFPLLVQSLLCNHTELQLSTMTTLLDLISDAPEIISKNIDSIVNQLLKLSNYQPSMKI RIAAIRCLNKLSTLPALLVLPYRTQVIASLEPRLDDKKRLVRKEAVQTRCLWYLIGQPGK |
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