Gene
| Gene Model ID | pfu_aug2.0_279.1_30547 |
|---|---|
| Locus | scaffold279.1 : 6406 ... 59324 : + |
| To GenomeBrowser | scaffold279.1:6406..59324 |
| Genes list of scaffold | scaffold279.1 |
| Synonym | pfu_aug1.0_670.1_43784 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_279.1_30547.t1 | 5 | 1 | LRR_6 | 146 | 168 | 1.4e-07 | 30.8 | 7.9e-05 | 1.2 | 9.4 |
| pfu_aug2.0_279.1_30547.t1 | 5 | 2 | LRR_6 | 207 | 227 | 1.4e-07 | 30.8 | 0.0019 | 28.0 | 5.2 |
| pfu_aug2.0_279.1_30547.t1 | 5 | 3 | LRR_6 | 235 | 254 | 1.4e-07 | 30.8 | 1.5e-05 | 0.22 | 11.6 |
| pfu_aug2.0_279.1_30547.t1 | 5 | 4 | LRR_6 | 262 | 275 | 1.4e-07 | 30.8 | 0.21 | 3100.0 | -1.2 |
| pfu_aug2.0_279.1_30547.t1 | 5 | 5 | LRR_6 | 541 | 547 | 1.4e-07 | 30.8 | 0.41 | 6100.0 | -2.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_279.1_30547.t1 | gi|679242927|gb|KFW96186.1| | Centrosomal protein of 78 kDa, partial [Phalacrocorax carbo] | 0.0 |
| pfu_aug2.0_279.1_30547.t1 | gi|690453867|ref|XP_009326376.1| | PREDICTED: centrosomal protein of 78 kDa [Pygoscelis adeliae] | 0.0 |
| pfu_aug2.0_279.1_30547.t1 | gi|695144718|ref|XP_009499711.1| | PREDICTED: centrosomal protein of 78 kDa [Phalacrocorax carbo] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_279.1_30547.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_279.1_30547.t1 atgattgaaagcgtccagattcgtcagagaggtgcctatgactttgaaagccattatgacaacctatgtgcaatgcagga ctcctgtccactaccagccgtcaaggctcacttagctcaaggagtgctggacatcaatggagatagggtcagagtcaatg attgggcaccaatcctgaacaccattcgcatcaacaagagtttggaattcattgcggtccgtagttactacactcctcca gctgaagataatgagaaaaaagcaataatcgagaagaggaagatgccctcggtgaggtccaaggaggttacatataggct gtgtaaggctctgaaagaatgcttgatctgtacaccaaatctgtcgtgtgtagaactacaggggctgccactcagagaga gggacctacagactcttatgaagggtcttgcaaagaacagcacattacaccatttgtctctagaattttgccgtgttgga gattctggtttagacattatctgtaaaggggctgaatctttggccaaagtaatcaagcaccaggcaatgaagcgccacaa tgaggcttggcgggacagccttagatacagacgacctgaccttgaccgtatgcctggtatcagacgtattactattaaca acaaccctatgctgggagatcaaggggcaatactcctggctgaggccttaaaagacgacctttggcttaaagcccttgac cttcaaggctgtggaatatcaaccaatggtgcaaaacatttattagatgtcctcaaatataacacaacagtcgtggtact ggatgttcgcagaaatccgctaatcgaccgagatgtcgtccattccattatggagcagttgatgattaactgtaacggac aagacacggagtataagtggatcaaggcagaagagatacttgatggcgtaaaaggaaaatcagcaaagaaacgaaggaca aaaactctgaacagcagctttggtagaaaaacgaccatcagagtgagttacccacctgagcatatacctggtaagacaag tctgtttgaaaacagtgaggcatcgcccaccacctcccctgaccacacccagtctatcctcatctcaagggaggaagagg aggaggatacactgagggaactagagaggctcaagttagacgacagtaacttagacaccggagtcactaatgtaaaggaa ttacagatcgagttgatacaagtgaagaggaaaatgcagcaggagagattggccaggacacgcagtgataagagagttgt agagttaacattagagaataagagattacgtgaagatttagcacgtcaaagcctcggtggaaaggagaatgccttagatg atgacagtgtcctagaaacaatagaagcttccttcaagcaatttcacgagtttctagatttactcagggaggctgggttg ggtcagttgatcaccatggctggacttgaccacaaagattccccatttacacaagctctacccatggcccagaggaattc ccagggtcagaggtcagtctacacaacgagtccctccaaagtccctccacgacccatcaaacctaccatgaaaacaaact acttcagtggggatatatcgtccagcaataagatcggcagttctgctagtgcgtttgataagaaaatgagggaattccaa ggagagtcttacttggataatgagagtctgtatacgcaccctgctaacaccacggacccgaccatgatgggggataacaa cgatgtgacaggtaaagggccgatgaaaagggacgaattgtatgaaaggatactgcatgagacaagcggagtgtttacac atatggaccaggatagtgttacaataggtgatttggttccccaaaaagacgttacaaaagatctgcctaaagccgagagt ccgaaacctgagaaatcaagtaaagagccttcctcacctaaagatacccataggtctgatctccgtcaggaagaacattc catcggattgagagaggaaatcgtgcacgatttagatgatttcgaccaaagtgagaaagatatttcagacactatcagca agcctaaaccgcagcccaggccacggaaggtcagtgaggaagatagcctgcaggataagaaaggcaaggatggtaaacct ccgaaagaatcaccggagcacaagtcacgcatgagtgactacaattatagcatggacagcttcgagcagtcttatgtcag tgagaggggggaggtaatacatctagatcaggatctgtatggggattccccttctcctgcccctgttatagatagtgagg aagaagacttttaa |
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Protein
| Protein ID | pfu_aug2.0_279.1_30547.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_279.1_30547.t1 MIESVQIRQRGAYDFESHYDNLCAMQDSCPLPAVKAHLAQGVLDINGDRVRVNDWAPILNTIRINKSLEFIAVRSYYTPP AEDNEKKAIIEKRKMPSVRSKEVTYRLCKALKECLICTPNLSCVELQGLPLRERDLQTLMKGLAKNSTLHHLSLEFCRVG DSGLDIICKGAESLAKVIKHQAMKRHNEAWRDSLRYRRPDLDRMPGIRRITINNNPMLGDQGAILLAEALKDDLWLKALD LQGCGISTNGAKHLLDVLKYNTTVVVLDVRRNPLIDRDVVHSIMEQLMINCNGQDTEYKWIKAEEILDGVKGKSAKKRRT KTLNSSFGRKTTIRVSYPPEHIPGKTSLFENSEASPTTSPDHTQSILISREEEEEDTLRELERLKLDDSNLDTGVTNVKE LQIELIQVKRKMQQERLARTRSDKRVVELTLENKRLREDLARQSLGGKENALDDDSVLETIEASFKQFHEFLDLLREAGL GQLITMAGLDHKDSPFTQALPMAQRNSQGQRSVYTTSPSKVPPRPIKPTMKTNYFSGDISSSNKIGSSASAFDKKMREFQ GESYLDNESLYTHPANTTDPTMMGDNNDVTGKGPMKRDELYERILHETSGVFTHMDQDSVTIGDLVPQKDVTKDLPKAES PKPEKSSKEPSSPKDTHRSDLRQEEHSIGLREEIVHDLDDFDQSEKDISDTISKPKPQPRPRKVSEEDSLQDKKGKDGKP PKESPEHKSRMSDYNYSMDSFEQSYVSERGEVIHLDQDLYGDSPSPAPVIDSEEEDF |
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