Gene
| Gene Model ID | pfu_aug2.0_279.1_30552 |
|---|---|
| Locus | scaffold279.1 : 133896 ... 161497 : + |
| To GenomeBrowser | scaffold279.1:133896..161497 |
| Genes list of scaffold | scaffold279.1 |
| Synonym | pfu_aug1.0_344.1_29195 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_279.1_30552.t2 | 1 | 1 | fn3 | 211 | 286 | 2.2e-10 | 40.5 | 1.4e-13 | 6.9e-10 | 38.9 |
| pfu_aug2.0_279.1_30552.t2 | 2 | 1 | Kringle | 892 | 946 | 1.3e-11 | 44.4 | 0.14 | 710.0 | 0.4 |
| pfu_aug2.0_279.1_30552.t2 | 2 | 2 | Kringle | 947 | 1013 | 1.3e-11 | 44.4 | 9.7e-15 | 4.8e-11 | 42.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_279.1_30552.t2 | gi|156542937|ref|XP_001601716.1| | PREDICTED: tyrosine-protein kinase transmembrane receptor Ror2 [Nasonia vitripennis] | 4.0e-12 |
| pfu_aug2.0_279.1_30552.t2 | gi|658910736|ref|XP_008395438.1| | PREDICTED: plasminogen [Poecilia reticulata] | 1.0e-11 |
| pfu_aug2.0_279.1_30552.t2 | gi|260806877|ref|XP_002598310.1| | hypothetical protein BRAFLDRAFT_204821 [Branchiostoma floridae] | 1.0e-11 |
Transcript
| Transcript ID | pfu_aug2.0_279.1_30552.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_279.1_30552.t1 atgaagtttttagcagcatgtttcgtgcttttccagtttataatagcaatttggggatctgactgtccgaaaagatttat tgatattccaacacagcaattcttcgatgagaaacagtttgaaggtaaatggtatcatcagctacatacgacgtacgcac gggcaaataacgaatggatatctggtgtagagagtatacagctaagtgatgtaggaatatacaacttaacttacacagcg tacagtaaacaagacaaacagtgcaatgtgaaaacagcaccaagattgatcatgatcagaaagggtggtagttatcatta caacagaggattcgtacagatgcatattttggttatctctacggattacgagaacgctttggtggctttttgttttggag agctccaagatggggtgtgtccaaaatatcaatcaaagtattcgatatggtctagatctatggagtttccatcgagaagg gtagttgacaaaatgaaacatttggtggaaactcaactctgcttggatttcacagatttcatagagattgaacaaggtct gtgcgatttcggagcccaaaataactacggacaaattgagacaaggtgtcccacccgacctggtcacgtacaaacggaag ttggtgtgacgtctgctaacgtaacgtggactccaccaaacgacggttctaacgtagttgtcagagggtatagattaggt attggaacagacttcgacagcgtccagtcaaatgatgtggaaaacaattatgactcccaacacttggcaaatctagttcc agacactgaatatgttataaaggtgacggcgtacaataacgcaggggaagggatggccacataccaaagaatccaaactc taaaagaaccatgtggttttgatgacatctctgcgcaaaacaactttgatctgaataagtttttgggcacgtggtatgtg acgtcagagacaacatacgtatggggacaaagttcttggacatcggccgtcgtgcgcttacagaacgaccatcatggtca tcttgtgttcttgtacagcgcaatgaaagaacaacactgtatgcatgcccaagaatatcatgttgctcaaacaggagagg ggatacttagtttcacagaaaaggaagcagccacatacaagatcgtgttcacggactaccaacacgccttggttacggtg tgtttctctagtaacagcccatgtgatcagtcccggcgacaagtagaggtgtggacacgggcaggggactaccagattcc tgactatgtacggcaacacatgaatgacattataacaaacaagttatgcataccactggatgattttgttgattcgaggc caggtatatgtcatcttgatgatactcatgatggtaagtaa |
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| Transcript ID | pfu_aug2.0_279.1_30552.t2 |
| Definition | - |
>pfu_aug2.0_279.1_30552.t2 atgaagtttttagcagcatgtttcgtgcttttccagtttataatagcaatttggggatctgactgtccgaaaagatttat tgatattccaacacagcaattcttcgatgagaaacagtttgaaggtaaatggtatcatcagctacatacgacgtacgcac gggcaaataacgaatggatatctggtgtagagagtatacagctaagtgatgtaggaatatacaacttaacttacacagcg tacagtaaacaagacaaacagtgcaatgtgaaaacagcaccaagattgatcatgatcagaaagggtggtagttatcatta caacagaggattcgtacagatgcatattttggttatctctacggattacgagaacgctttggtggctttttgttttggag agctccaagatggggtgtgtccaaaatatcaatcaaagtattcgatatggtctagatctatggagtttccatcgagaagg gtagttgacaaaatgaaacatttggtggaaactcaactctgcttggatttcacagatttcatagagattgaacaaggtct gtgcgatttcggagcccaaaataactacggacaaattgagacaaggtgtcccacccgacctggtcacgtacaaacggaag ttggtgtgacgtctgctaacgtaacgtggactccaccaaacgacggttctaacgtagttgtcagagggtatagattaggt attggaacagacttcgacagcgtccagtcaaatgatgtggaaaacaattatgactcccaacacttggcaaatctagttcc agacactgaatatgttataaaggtgacggcgtacaataacgcaggggaagggatggccacataccaaagaatccaaactc taaaagaaccatgtggttttgatgacatctctgcgcaaaacaactttgatctgaataagtttttgggcacgtggtatgtg acgtcagagacaacatacgtatggggacaaagttcttggacatcggccgtcgtgcgcttacagaacgaccatcatggtca tcttgtgttcttgtacagcgcaatgaaagaacaacactgtatgcatgcccaagaatatcatgttgctcaaacaggagagg ggatacttagtttcacagaaaaggaagcagccacatacaagatcgtgttcacggactaccaacacgccttggttacggtg tgtttctctagtaacagcccatgtgatcagtcccggcgacaagtagaggtgtggacacgggcaggggactaccagattcc tgactatgtacggcaacacatgaatgacattataacaaacaagttatgcataccactggatgattttgttgattcgaggc caggtatatgtcatcttgatgatactcatgatgtaccattcagtgtagtgtacatggatgataagtttgtcattctgtac acatgcgcacaggaaaatgttagtcaccactgtgacctatcacagacgcattacgaagtgatgtcacgtggtacagataa aataacaccagacgaagaacataaattatttgagctaatttgcataccaccagaacatttggccgaggaacaatcaccag gaccatgtgtttttgatgacatttctgtgcaaaacaactttgatctagataagtttttgggcacgtggtacgtgacgtca gagacaacttacgtatgggggccaaacacctggacatcgtccgtcgtgcacttacagtatgaccatcatggtcatcttgt gctcttgtacagcgcaatgaaaaaccaacactgtatacatgcccaagagtaccatgttgctcagacgggagaagggatac ttagtcatacggaaaaggaagcagccacatacaagatcgtgttcacggactatcaacacgccttggtaacggtgtgtttc tctagtaacagcccatgtgatcagtcccggcgacaagtagaggtctggactcgagcaggggacttcttgatacctgacta tgtacagagacacatgaatgacattataactaatcggttatgtataccactgggggatttcgtagattcaataccaggtc gatgtcatcttgatgatacccatgatgaggattgtgaccacgagcatatagtttcccatgctcatacagacctacaccag ctagtagggacttggcacactcgttatcagactcacacattgtggggaaattcaacttggtcgtcaaaaactagagtgtt cacatatgccaacaacttgctcatattagatcattatggtaacagtgatggggactgcggactcagattaggaaacgagg tggtatcacagtcggccaataatggaggtgaactcagaagcggctccatgtcatttagtatagtgtacttggatgataag ttcgccattttgtataaatgcgcacagaaaaatgttagtcaccactgtgacctatcacagacgcattacgaagtgctgtc gcgtggtacagataaaataacaccagacgaagaacataaattatttgagctaatttgtataccaccagaaaatttggtag aggaacaaaattcagtaaacagatatgcttttctggaagtggactcacgggattccaaatacagaagggacattaccact tccaaaaggaaaacttgggatataataggagagtcggatacagaatgcaaaaattctagtgtggaggtaatgtcacgtga tttggaacctatttcttacaaacatagacaggtgcttgatcagaaattgaatgaaggtttttgtactcacatgaatggat tgcaggaggtctctatcgtaaattgtttcactcgagatgaaccttactttggggtaagcaatcgcacaatcacgggaaag ggctgtcagagatggaaatcagaatcgccccattctcactcgtatggggaccgcctcctgcccctggatagctactgtag aagttacgactggtccgtaccgtggtgttatacattggacccagatacaagatgggaaaactgttcggtccccgtatgcg ttgatgactgcgttcccgccagcatggccggaaaagagaagattgcagtggagcccatgaaatcaacatcaaaagaggga ggcagtatatggaatctatctaaactgttgaagaagttattttaa |
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Protein
| Protein ID | pfu_aug2.0_279.1_30552.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_279.1_30552.t1 MKFLAACFVLFQFIIAIWGSDCPKRFIDIPTQQFFDEKQFEGKWYHQLHTTYARANNEWISGVESIQLSDVGIYNLTYTA YSKQDKQCNVKTAPRLIMIRKGGSYHYNRGFVQMHILVISTDYENALVAFCFGELQDGVCPKYQSKYSIWSRSMEFPSRR VVDKMKHLVETQLCLDFTDFIEIEQGLCDFGAQNNYGQIETRCPTRPGHVQTEVGVTSANVTWTPPNDGSNVVVRGYRLG IGTDFDSVQSNDVENNYDSQHLANLVPDTEYVIKVTAYNNAGEGMATYQRIQTLKEPCGFDDISAQNNFDLNKFLGTWYV TSETTYVWGQSSWTSAVVRLQNDHHGHLVFLYSAMKEQHCMHAQEYHVAQTGEGILSFTEKEAATYKIVFTDYQHALVTV CFSSNSPCDQSRRQVEVWTRAGDYQIPDYVRQHMNDIITNKLCIPLDDFVDSRPGICHLDDTHDGK |
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| Protein ID | pfu_aug2.0_279.1_30552.t2 |
| Definition | - |
>pfu_aug2.0_279.1_30552.t2 MKFLAACFVLFQFIIAIWGSDCPKRFIDIPTQQFFDEKQFEGKWYHQLHTTYARANNEWISGVESIQLSDVGIYNLTYTA YSKQDKQCNVKTAPRLIMIRKGGSYHYNRGFVQMHILVISTDYENALVAFCFGELQDGVCPKYQSKYSIWSRSMEFPSRR VVDKMKHLVETQLCLDFTDFIEIEQGLCDFGAQNNYGQIETRCPTRPGHVQTEVGVTSANVTWTPPNDGSNVVVRGYRLG IGTDFDSVQSNDVENNYDSQHLANLVPDTEYVIKVTAYNNAGEGMATYQRIQTLKEPCGFDDISAQNNFDLNKFLGTWYV TSETTYVWGQSSWTSAVVRLQNDHHGHLVFLYSAMKEQHCMHAQEYHVAQTGEGILSFTEKEAATYKIVFTDYQHALVTV CFSSNSPCDQSRRQVEVWTRAGDYQIPDYVRQHMNDIITNKLCIPLDDFVDSRPGICHLDDTHDVPFSVVYMDDKFVILY TCAQENVSHHCDLSQTHYEVMSRGTDKITPDEEHKLFELICIPPEHLAEEQSPGPCVFDDISVQNNFDLDKFLGTWYVTS ETTYVWGPNTWTSSVVHLQYDHHGHLVLLYSAMKNQHCIHAQEYHVAQTGEGILSHTEKEAATYKIVFTDYQHALVTVCF SSNSPCDQSRRQVEVWTRAGDFLIPDYVQRHMNDIITNRLCIPLGDFVDSIPGRCHLDDTHDEDCDHEHIVSHAHTDLHQ LVGTWHTRYQTHTLWGNSTWSSKTRVFTYANNLLILDHYGNSDGDCGLRLGNEVVSQSANNGGELRSGSMSFSIVYLDDK FAILYKCAQKNVSHHCDLSQTHYEVLSRGTDKITPDEEHKLFELICIPPENLVEEQNSVNRYAFLEVDSRDSKYRRDITT SKRKTWDIIGESDTECKNSSVEVMSRDLEPISYKHRQVLDQKLNEGFCTHMNGLQEVSIVNCFTRDEPYFGVSNRTITGK GCQRWKSESPHSHSYGDRLLPLDSYCRSYDWSVPWCYTLDPDTRWENCSVPVCVDDCVPASMAGKEKIAVEPMKSTSKEG GSIWNLSKLLKKLF |
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