Gene
| Gene Model ID | pfu_aug2.0_279.1_30558 |
|---|---|
| Locus | scaffold279.1 : 263263 ... 281844 : - |
| To GenomeBrowser | scaffold279.1:263263..281844 |
| Genes list of scaffold | scaffold279.1 |
| Synonym | pfu_aug1.0_1987.1_29935 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_279.1_30558.t1 | 3 | 1 | Choline_transpo | 77 | 109 | 0.0 | 266.9 | 0.0017 | 26.0 | 3.4 |
| pfu_aug2.0_279.1_30558.t1 | 3 | 2 | Choline_transpo | 275 | 333 | 0.0 | 266.9 | 1.0 | 15000.0 | -6.5 |
| pfu_aug2.0_279.1_30558.t1 | 3 | 3 | Choline_transpo | 366 | 623 | 0.0 | 266.9 | 0.0 | 0.0 | 265.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_279.1_30558.t1 | gi|260828857|ref|XP_002609379.1| | hypothetical protein BRAFLDRAFT_86470 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_279.1_30558.t1 | gi|512014063|ref|XP_004824380.1| | 0.0 | |
| pfu_aug2.0_279.1_30558.t1 | gi|512014065|ref|XP_004824381.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_279.1_30558.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_279.1_30558.t1 atggaactgcaagggcgcggcaggaactatgtgcccagtgatgaagggggtaaaaagaagggggagaagaaagaatttat gatagccaatggcgaaaaactgaacttaggagatataaatcaggagttagacgacgaaccgacagaatatgattatgtgg acacgaaagatacaagcaaatacggtacacctttgcaacatgaccctaactacaaaggaccaatcaaaaacagatcgtgt acagacattatttgctgtttactcttcatcatattcatagctggattggctgtggtggcatactttgcattcagatatgg agacccgcgactgttgatatacccagtaaactctgataatgaagtttgtggctacggcaaacaagtgggcaagccatact tacatttctttgacatgatagaatgtggcaagatggggataggtgtctttgtgaatggatgtcccacacctcaggtttgt gtttctgaatgtcccacagagaattgggtgtacattgatactataagcacagcatctgatcttaagttctgcaaggactc tatcaacccagctacatcttctaagctaggagagaaattgaattttaaaagctctacagagctttcttttcaatccttat tgataaacagatgtgtaccggagatcctgactgacttccttgagggcgcggccagcctggcggaggggctcagtaacagt aatgttaatgccacgtcagcgagcggctctgattacagcgtgtcagaaatagaatctggactagatatctatggaacatt tctgaaggccaaggagtacgccgagaagataattgaggatgtcgtaacagcctggtggatgatacttataggtcttgtat tgtctatgatatttgcctttatatggatcgtcattatgcgatggattgccggcataatggtctggttcaccatatttgcc ttcattggcctatttggatttgctgcagcctggtcattttatcagtacatggatgtgaagggatcttcagatagttttta tatacagtttgttgtactacaaatgaacttgtccaaggaaaaactttacttagcatttggtattattgccgctgtaattc ttgccatagccctccttattttactgatactgtgtggtagaattagaattgccatttcattgatcaaagaaggtagcaat attaagtcgtctacgtcacagttctttggcgaggcttgtgacgcatcctcctcagtagcggggaacacaacagcttccaa tgaattctgcacatttctcaagagtcaggaagaaaacttcaccttctacacccagatctacgctctgtttatgttgttct ggttggttaactttgtcgttgccctgggccagatgactttagctggcgcgtttgcatcgtactactgggcatttaataag ccgaaggatatcccagcattccctctgctcggctccttctggaggtgctttaggtaccatttaggttccctggcattcgg gtctctaatcatagccatagtacaaattatcagagttatgttagaatatgtggaccataagctgaaaggatcagaaaatg ctgtagctaaattcttcctgaaatgcttaaagtgttgcttttggtgtttagagaaattcctcaaatttctaaacaaaaat gcctatatcctgattgctgctcatggcaaaaatttctgtacatctgcaaaaaatgcatttatgcttattatgagaaatat tgtaagggttgtagtagtggacaaagtggccgatttcttgctcttaatcggaaagctggttgttgtcgcttttgcagctt ctacctcctttttcttctttgatggaagaattgaattccttgcttccttttacaccaagtctgaacttctacgtagtccc aatagtgttggtgacaataggcgcctatgtgattgccagctgtttcttcagtgtatatgggatggctgtggacacactat tcctttgcttcttggaagaccttga |
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Protein
| Protein ID | pfu_aug2.0_279.1_30558.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_279.1_30558.t1 MELQGRGRNYVPSDEGGKKKGEKKEFMIANGEKLNLGDINQELDDEPTEYDYVDTKDTSKYGTPLQHDPNYKGPIKNRSC TDIICCLLFIIFIAGLAVVAYFAFRYGDPRLLIYPVNSDNEVCGYGKQVGKPYLHFFDMIECGKMGIGVFVNGCPTPQVC VSECPTENWVYIDTISTASDLKFCKDSINPATSSKLGEKLNFKSSTELSFQSLLINRCVPEILTDFLEGAASLAEGLSNS NVNATSASGSDYSVSEIESGLDIYGTFLKAKEYAEKIIEDVVTAWWMILIGLVLSMIFAFIWIVIMRWIAGIMVWFTIFA FIGLFGFAAAWSFYQYMDVKGSSDSFYIQFVVLQMNLSKEKLYLAFGIIAAVILAIALLILLILCGRIRIAISLIKEGSN IKSSTSQFFGEACDASSSVAGNTTASNEFCTFLKSQEENFTFYTQIYALFMLFWLVNFVVALGQMTLAGAFASYYWAFNK PKDIPAFPLLGSFWRCFRYHLGSLAFGSLIIAIVQIIRVMLEYVDHKLKGSENAVAKFFLKCLKCCFWCLEKFLKFLNKN AYILIAAHGKNFCTSAKNAFMLIMRNIVRVVVVDKVADFLLLIGKLVVVAFAASTSFFFFDGRIEFLASFYTKSELLRSP NSVGDNRRLCDCQLFLQCIWDGCGHTIPLLLGRP |
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