Gene
| Gene Model ID | pfu_aug2.0_279.1_30560 |
|---|---|
| Locus | scaffold279.1 : 300302 ... 318074 : - |
| To GenomeBrowser | scaffold279.1:300302..318074 |
| Genes list of scaffold | scaffold279.1 |
| Synonym | pfu_aug1.0_1987.1_29933 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_279.1_30560.t1 | 2 | 1 | Choline_transpo | 52 | 139 | 0.0 | 378.8 | 0.015 | 220.0 | 0.3 |
| pfu_aug2.0_279.1_30560.t1 | 2 | 2 | Choline_transpo | 243 | 597 | 0.0 | 378.8 | 0.0 | 0.0 | 378.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_279.1_30560.t1 | gi|675414187|ref|XP_008920221.1| | PREDICTED: choline transporter-like protein 5 [Manacus vitellinus] | 0.0 |
| pfu_aug2.0_279.1_30560.t1 | gi|332245651|ref|XP_003271970.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_279.1_30560.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_279.1_30560.t1 atggggaaaagtaaggtagaagatgaaaaatcggcacaaagtaaagatgagaaaggaagtagtgatgataaggaggatac caagaaatatggtgagccaagaaaacatgatccaaattttaatggacctataaagaaaagatcatgtacagacatcatct gctgtctcctcttcatgttctttttggcgggaatggtcgcgtgctcagctatcggctacgccagaggagacccatacaaa cttctttatcccaccgatacgtcgggtagaatctgtggatacgatgctgccgttaagtcaaagccatatttgatgttttt tgacttgttagactgtgccaaactcgggacggctgtaatatatacgggatgtcctacgccacaggtttgtgtgtcgtctt gtactacctcgtactatgtttgggctgagacagtggccaaggaaggtgctggaacaaagactgcctcagatagaacaaca gacatgttatgcaaggagggggtggacccaacaacaccgtcaacagccaacatatactcagatttgatatctacagaaca atgtgcctcttactatgtacccaccactcaggctatttactacagttattctacatactatgacctgaagaatcagaaca ttactgccacatggcaagtctccgaggcgtttgctcttaacttcagctactacctcggactgaaagaaacatggctagca tttggttgtacactgtccacctttactacaatattccttctgattctgatattcttactgccaagaataaaaatagctat cgagcttattaaggaaggaagcagagccattggcaatatgatattcaccctgttttggcccatcattccatttgttctac aagcagttctcattggctacatgggtattagtgcagtttatattgcctctatgggagattcatcatactacactaacggg acaaacacgactcaagacacaatcaattattaccttgagaggataccttgctcacctaacgatacaacactgggatcata ctgtgattttgtcaaatatggagggacagagtatatcattcctatgcaggtgtttatgttattcatgtttttctgggcaa tgaattttatcgtcgcgctgggtcagatggtcttagctggctcttttgcgtcatactactgggcgtttgataaaccaaag gatatcccagcattcccactgacggcatcattatacagatctctcaggtatcacttgggttccctggcgttcggagctct cattatagctatcatacagatgattcgagttgtactcgagtatatagactacaaactcaaagactcaaaaaatgtggtgg caaaattctttgtcaagtgtttaaagtgttgtttctggtgtttggaaaagtttatgaagttcatcaacagaaatgcttat ataatgatcgcggtgtatgggaaaaatttctgtacagctgctaaagatgctttcttcctaatcatcagaaatgttgtcag ggccgttgtacttgacaagatcacagattatgtcctgtttctaagtaaacttctagtcacagctggagtaggtattggag cattttactggttccagggaaatttagatttctttgctgattatgttccctcactcaattactactttactccagttatt atcgtagttatgacaacgtacctcgttacatgttgtttcttcagtgtatataccatggcagtagatacactcttcctttg ctttttggaggatctagagatgaatgacggttcaccagagaagccatatttcatgagtaaaggactgatgaagatcctgg ggaagaaaaacaccaaggacccgaacgaaaagaaaaaaggatgctgcggatgctatactcacagtaaccatggaaacctt taa |
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Protein
| Protein ID | pfu_aug2.0_279.1_30560.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_279.1_30560.t1 MGKSKVEDEKSAQSKDEKGSSDDKEDTKKYGEPRKHDPNFNGPIKKRSCTDIICCLLFMFFLAGMVACSAIGYARGDPYK LLYPTDTSGRICGYDAAVKSKPYLMFFDLLDCAKLGTAVIYTGCPTPQVCVSSCTTSYYVWAETVAKEGAGTKTASDRTT DMLCKEGVDPTTPSTANIYSDLISTEQCASYYVPTTQAIYYSYSTYYDLKNQNITATWQVSEAFALNFSYYLGLKETWLA FGCTLSTFTTIFLLILIFLLPRIKIAIELIKEGSRAIGNMIFTLFWPIIPFVLQAVLIGYMGISAVYIASMGDSSYYTNG TNTTQDTINYYLERIPCSPNDTTLGSYCDFVKYGGTEYIIPMQVFMLFMFFWAMNFIVALGQMVLAGSFASYYWAFDKPK DIPAFPLTASLYRSLRYHLGSLAFGALIIAIIQMIRVVLEYIDYKLKDSKNVVAKFFVKCLKCCFWCLEKFMKFINRNAY IMIAVYGKNFCTAAKDAFFLIIRNVVRAVVLDKITDYVLFLSKLLVTAGVGIGAFYWFQGNLDFFADYVPSLNYYFTPVI IVVMTTYLVTCCFFSVYTMAVDTLFLCFLEDLEMNDGSPEKPYFMSKGLMKILGKKNTKDPNEKKKGCCGCYTHSNHGNL |
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