Gene
| Gene Model ID | pfu_aug2.0_28.1_26677 |
|---|---|
| Locus | scaffold28.1 : 11297 ... 12655 : - |
| To GenomeBrowser | scaffold28.1:11297..12655 |
| Genes list of scaffold | scaffold28.1 |
| Synonym | pfu_aug1.0_24563.1_54986 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_28.1_26677.t1 | 3 | 1 | Neur_chan_memb | 6 | 26 | 2.7e-13 | 50.3 | 0.65 | 4800.0 | -2.9 |
| pfu_aug2.0_28.1_26677.t1 | 1 | 1 | Neur_chan_LBD | 31 | 225 | 3.8e-29 | 101.3 | 3.1e-32 | 2.3e-28 | 98.8 |
| pfu_aug2.0_28.1_26677.t1 | 3 | 2 | Neur_chan_memb | 233 | 321 | 2.7e-13 | 50.3 | 3.7e-17 | 2.7e-13 | 50.3 |
| pfu_aug2.0_28.1_26677.t1 | 3 | 3 | Neur_chan_memb | 353 | 396 | 2.7e-13 | 50.3 | 0.052 | 380.0 | 0.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_28.1_26677.t1 | gi|602667796|ref|XP_007439456.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-7-like [Python bivittatus] | 7.0e-35 |
Transcript
| Transcript ID | pfu_aug2.0_28.1_26677.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_28.1_26677.t1 atgatctgtagtgtaaccgtgatggcttttgccttcattttgatatactccacaaagtttgtcttctccacaaattattc ggacgtttaccaaattaagcaggatctgatggtcaactattcgaatgagataattccagtcgaggtcgtttacacaaagg tccatttgtcattgtcattggaaattaattcaatcagcagtttcgatgatgtcggcggagtactgactacgatttgtagt tttcacatggaatggactgaccagaagttggtctggaatccttttgattacaacctggcaagagaattttacaccccgtt atcaaaaatttggacaccgacgttacaaataacgaacactgcaaaaaatttgcgactatattatgatgccacgtctacat atgcctacgtccagtttctcggagaagtctcggtaaccattggtcaagtgttgtccacaacatgtaccccggatgttaga tactatccaatggactaccataactgtgaaattcgtatcgcacccacactctctgatatcaacgtaacctccactctgag tgtatcttccattacagaaaatgctcaatgggatctcataggttcatccagtaaaagagaagctacttcttccggtatag atacgcatgtcttcactttgataatacagaggcggtccgcatttcttttggtcagccttgtcatgccagtcatatttttg ggtgtgatagatctctttgttttcatattgccgtttgattccggagaacgagttggattcaccatgactgtgttactagc ctttgctgtatttctcaccatcaccacggataagcttccagacgcaagcaacacaatctcagttttctgtgtctacctcg ctttcatgttagtatttagtggacttattacgctagtcaacatatttcttctttccttctaccatagagatgaaaaggat aaattaccttgctttagttttctgaaattgtgtttgcccaaatctacggtttcctctcttgatgatataaccacgaaaaa tggcaatgataaagttcacgaattgagagaggaaagaaaagatggtgatgattctaaaccaaaagagaagaaagaattca gatggtattgtaacgttgctgatagaattgtggccgtcttctttgctcttacacttttcattgcatctgctgtgttcatt gctatcgtaaataatgcttcaaaaaattaa |
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Protein
| Protein ID | pfu_aug2.0_28.1_26677.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_28.1_26677.t1 MICSVTVMAFAFILIYSTKFVFSTNYSDVYQIKQDLMVNYSNEIIPVEVVYTKVHLSLSLEINSISSFDDVGGVLTTICS FHMEWTDQKLVWNPFDYNLAREFYTPLSKIWTPTLQITNTAKNLRLYYDATSTYAYVQFLGEVSVTIGQVLSTTCTPDVR YYPMDYHNCEIRIAPTLSDINVTSTLSVSSITENAQWDLIGSSSKREATSSGIDTHVFTLIIQRRSAFLLVSLVMPVIFL GVIDLFVFILPFDSGERVGFTMTVLLAFAVFLTITTDKLPDASNTISVFCVYLAFMLVFSGLITLVNIFLLSFYHRDEKD KLPCFSFLKLCLPKSTVSSLDDITTKNGNDKVHELREERKDGDDSKPKEKKEFRWYCNVADRIVAVFFALTLFIASAVFI AIVNNASKN |
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