Gene
| Gene Model ID | pfu_aug2.0_28.1_26678 |
|---|---|
| Locus | scaffold28.1 : 104806 ... 122396 : + |
| To GenomeBrowser | scaffold28.1:104806..122396 |
| Genes list of scaffold | scaffold28.1 |
| Synonym | pfu_aug1.0_68.1_00116 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_28.1_26678.t1 | 1 | 1 | HMG_box | 413 | 481 | 4.5e-24 | 84.5 | 1.1e-27 | 8.2e-24 | 83.6 |
| pfu_aug2.0_28.1_26678.t1 | 1 | 1 | HMG_box_2 | 414 | 465 | 3.7e-08 | 33.6 | 1.1e-11 | 8.1e-08 | 32.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_28.1_26678.t1 | gi|676465996|ref|XP_009057424.1| | hypothetical protein LOTGIDRAFT_121785 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_28.1_26678.t1 | gi|241853676|ref|XP_002415916.1| | sox13, putative [Ixodes scapularis] | 0.0 |
| pfu_aug2.0_28.1_26678.t1 | gi|571579214|ref|XP_003252026.2| | PREDICTED: transcription factor SOX-5-like, partial [Apis mellifera] | 0.0 |
| pfu_aug2.0_28.1_26678.t1 | gi|380019991|ref|XP_003693882.1| | 0.0 | |
| pfu_aug2.0_28.1_26678.t1 | gi|512892094|ref|XP_004922845.1| | PREDICTED: transcription factor Sox-5 [Bombyx mori] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_28.1_26678.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_28.1_26678.t1 atgtcttcaaagcgtaagaacacgccatctaaattacgaaccgatgacgtactagctcacaggactaattccgtgaatga cgacagtagtggcggagaaagcgacgcagagtttgactctaatttacaaattgtgactcgatcagacagtgagactcacg actcagaaaacagtaactcatataaatcaccacccacaaagaaacagcgaatccttcagagtgtaaaatacgagtcggac tcggactctgaatcagaattgtcatccaatcatatcaacggaatttctcatccaaattttttaacaaagtctaacattgg actgcaacgtaaatccatggaaagtgttctccgacgacttagctcaaaatctgaggtttcagacattgaattagagaaca ataacatgacgggactcaacgaagaccacaaggtcaaagaaagtatccaagtgttgcttagcgacggatccatcacggaa aaagaaagacgactgagtgaaatgatagcccagcttcagaatttaaaagaaaatatatcgaaacagaaacaaagtccaac ggaaaagctagaaaacggtacttccgtttcaacaccaacgtactcccatgtttcgccacagagtctttctcctgttacca tggatacaagacattctatttcaccaccctccattataccgccgtatcatgcttcaccaagatctcttccgtcacctagc aaccagcgacgaagcccaccaacggcaacggcagctaactggaccgctaccaatggcaacggcacagaagatattccact caacttgaccaaacctagggatataaaatcagagaaattagatgatgcctttgtcgccaaaatgacaggcaggatcgaca ggaacaaaacaccgcctcctgcgcacagcaacataaaacgtggttcctcatcaccacctagtgatgtcacgagtctaccg ggagctggtgtgcgcatgccctggggtcttcctcattacgtcacgagtcctttcatgatgaccaatcctctacaggtatc ctccatgctcagtagtatgccctcagtcctcagtggaaagacgccctcagatctagataaggaggcaatggtacaagaag cgttagctcgtcaactgtctcacagcggaatgactggccccgtatttcccggtaaaatgtttggtgccaaaataatacgg tctcagaaagagaagaacgaagccgggaaacctcatatcaagcgtccaatgaatgcctttatggtatgggcacgggaaga gagaagaaagatactcaaagcatgtcctgacatgcacaactctaacattagcaagattctaggagcaaaatggaaagcca tgacaaatgccgagaagcagccatattacgaagaacagtctcgccttagcaagcttcacatggaaaagcaccccgactac agatataggccaagaccaaaaagaacttgcattgtagatgggaaaaagcttagaatttccgaatataaatctttgatgag ggcacgtagacaagatatccgcagggtgtggtacggggactcgggtaccacgtatgtggaaggattactaggtgagaatt ctacagcgtcaagccctgacaatgtgcggcagaaattatctcccagtgcgtgtatgaatggctcctcacacagtcccctc cacccaggtggtttgaatggcatgtcacacggacttgatgacgaccacaatatgaatgatctcagtgacgatggtgattt gagtgatcatatgtccgaggaaagtcttgatgcttcatcgtatagacccacatctaacggacagatagggctatcacaag ccgcttcatag |
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Protein
| Protein ID | pfu_aug2.0_28.1_26678.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_28.1_26678.t1 MSSKRKNTPSKLRTDDVLAHRTNSVNDDSSGGESDAEFDSNLQIVTRSDSETHDSENSNSYKSPPTKKQRILQSVKYESD SDSESELSSNHINGISHPNFLTKSNIGLQRKSMESVLRRLSSKSEVSDIELENNNMTGLNEDHKVKESIQVLLSDGSITE KERRLSEMIAQLQNLKENISKQKQSPTEKLENGTSVSTPTYSHVSPQSLSPVTMDTRHSISPPSIIPPYHASPRSLPSPS NQRRSPPTATAANWTATNGNGTEDIPLNLTKPRDIKSEKLDDAFVAKMTGRIDRNKTPPPAHSNIKRGSSSPPSDVTSLP GAGVRMPWGLPHYVTSPFMMTNPLQVSSMLSSMPSVLSGKTPSDLDKEAMVQEALARQLSHSGMTGPVFPGKMFGAKIIR SQKEKNEAGKPHIKRPMNAFMVWAREERRKILKACPDMHNSNISKILGAKWKAMTNAEKQPYYEEQSRLSKLHMEKHPDY RYRPRPKRTCIVDGKKLRISEYKSLMRARRQDIRRVWYGDSGTTYVEGLLGENSTASSPDNVRQKLSPSACMNGSSHSPL HPGGLNGMSHGLDDDHNMNDLSDDGDLSDHMSEESLDASSYRPTSNGQIGLSQAAS |
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