Gene
| Gene Model ID | pfu_aug2.0_28.1_26679 |
|---|---|
| Locus | scaffold28.1 : 136286 ... 148407 : + |
| To GenomeBrowser | scaffold28.1:136286..148407 |
| Genes list of scaffold | scaffold28.1 |
| Synonym | pfu_aug1.0_5003.1_23707 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_28.1_26679.t1 | 2 | 1 | Aminotran_4 | 18 | 245 | 5.6e-20 | 71.8 | 6.8e-24 | 1.0e-19 | 70.9 |
| pfu_aug2.0_28.1_26679.t1 | 2 | 2 | Aminotran_4 | 275 | 294 | 5.6e-20 | 71.8 | 0.41 | 6100.0 | -3.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_28.1_26679.t1 | gi|260805494|ref|XP_002597622.1| | hypothetical protein BRAFLDRAFT_82278 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_28.1_26679.t1 | gi|676466005|ref|XP_009057427.1| | hypothetical protein LOTGIDRAFT_163115 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_28.1_26679.t1 | gi|390355454|ref|XP_788267.2| | 0.0 | |
| pfu_aug2.0_28.1_26679.t1 | gi|557019355|ref|XP_006010036.1| | PREDICTED: branched-chain-amino-acid aminotransferase, cytosolic-like [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_28.1_26679.t1 | gi|557258857|ref|XP_006015120.1| | PREDICTED: branched-chain-amino-acid aminotransferase, cytosolic-like [Alligator sinensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_28.1_26679.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_28.1_26679.t1 atgaaagcatataaaggagaagatggtaaaatcagaatgttccgtcccttggagaacatgataaggatgaacagcaccgc acaacgcagttgtctccctacgtttgatggggaggagttgatagaatgtatgaagacgttgatcagtatagacaaggatt gggtaccagactccaggaccagctcactgtatatacgtcccactatgattggtacagagccacagctgggagtgtctaga ccagaaagtgctttactttttgtcattataggtccagtaggggcgtactaccccactggcttgaaacccgttacattatt ggctgatcctaaatatgtacgagcctggccgggtggcagtggacaatacaagatgggagcaaactatggtcccacattgt cagttggacaagatgcagaaaaacaaggctgtcagcaggtactctggttatatggggaagatcagcaagtaacggaagtt ggagccatgaatatatttatgtactggatcaatgaacaaggagagaaggagcttatcactgctcccctgaatggactaat cctacctggaataacacggaagagtttattagagcttgccagggggtggggagagtacaaggtatcagaaagagaatata ccatgggagacattgtaaaaggtctgaaagaaaacagagttaaggagttatttggtgctggtacagcttgtgtcgtttgt ccggtagaaaagatactgtacaataacgagatgttacaaattcccaccatgtctgaaggtgctcctgtggccatgaagtt ctataatactttactggatattcaggttaaggagttatttggtgctggtacagcttgtgtcgtttgtccggtagaaaaga tactgtacaataacgagatgttacaaattcccaccatgtctgaaggtgctcctgtggccatgaagttctataatacttta ctggatattcaggaaaatactcttcttctgtga |
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Protein
| Protein ID | pfu_aug2.0_28.1_26679.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_28.1_26679.t1 MKAYKGEDGKIRMFRPLENMIRMNSTAQRSCLPTFDGEELIECMKTLISIDKDWVPDSRTSSLYIRPTMIGTEPQLGVSR PESALLFVIIGPVGAYYPTGLKPVTLLADPKYVRAWPGGSGQYKMGANYGPTLSVGQDAEKQGCQQVLWLYGEDQQVTEV GAMNIFMYWINEQGEKELITAPLNGLILPGITRKSLLELARGWGEYKVSEREYTMGDIVKGLKENRVKELFGAGTACVVC PVEKILYNNEMLQIPTMSEGAPVAMKFYNTLLDIQVKELFGAGTACVVCPVEKILYNNEMLQIPTMSEGAPVAMKFYNTL LDIQENTLLL |
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