Gene
| Gene Model ID | pfu_aug2.0_28.1_26681 |
|---|---|
| Locus | scaffold28.1 : 161534 ... 173655 : - |
| To GenomeBrowser | scaffold28.1:161534..173655 |
| Genes list of scaffold | scaffold28.1 |
| Synonym | pfu_aug1.0_5003.1_23709 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_28.1_26681.t1 | 1 | 1 | BTB | 26 | 123 | 2.8e-10 | 40.1 | 1.1e-13 | 5.6e-10 | 39.2 |
| pfu_aug2.0_28.1_26681.t1 | 2 | 1 | HMG_box | 478 | 496 | 9.0e-23 | 80.3 | 0.35 | 1800.0 | -0.7 |
| pfu_aug2.0_28.1_26681.t1 | 2 | 1 | HMG_box_2 | 478 | 502 | 3.9e-10 | 39.9 | 0.051 | 250.0 | 2.1 |
| pfu_aug2.0_28.1_26681.t1 | 2 | 2 | HMG_box | 561 | 629 | 9.0e-23 | 80.3 | 1.8e-26 | 9.0e-23 | 80.3 |
| pfu_aug2.0_28.1_26681.t1 | 2 | 2 | HMG_box_2 | 562 | 615 | 3.9e-10 | 39.9 | 1.5e-12 | 7.4e-09 | 35.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_28.1_26681.t1 | gi|675871490|ref|XP_009021305.1| | hypothetical protein HELRODRAFT_148116, partial [Helobdella robusta] | 1.0e-26 |
| pfu_aug2.0_28.1_26681.t1 | gi|13442974|gb|AAK26244.1| | SOX6 splice variant, partial [Homo sapiens] | 1.0e-25 |
| pfu_aug2.0_28.1_26681.t1 | gi|685587531|ref|XP_009184775.1| | PREDICTED: transcription factor SOX-6 isoform X5 [Papio anubis] | 2.0e-25 |
| pfu_aug2.0_28.1_26681.t1 | gi|488565793|ref|XP_004472568.1| | 2.0e-25 |
Transcript
| Transcript ID | pfu_aug2.0_28.1_26681.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_28.1_26681.t1 atgggtcactaccaaaagttttatacaaatcagatttattcgagttcattactgtgtcagcttgcttacatgtggaggaa tgatgtgttgtgtgatgctgtgatttggtcaggggtcatcagtgtcaaggcccacagagtgttgctgattgcgtcatgtc ccatgttgcagtccatggagagttctacagtcggttcacagctagaagtgagactggctgccgacatcaaggaaaagtcc ataaatactttcctacagtatctgtatgaaggatttatgctgctgacagaggagaactgtagagacatagagaagatagg aagactcctacaagttgacagtgttatacagtgctgcgctgatttccataaaagtatagataccaaaaggaacttttctg ggaacggaagtggttacaggtttggattccatgatatgcacgatgttgaatgtctggcagaggacaacattcagatttta gaaactgatcaagatagtggtacatctgggacgggtgtaggtgtgcatgtaatgagtaaaacatccgatctggatgattc agatttaatatacttggacatggatgaaagctcaaacgaatcacgcggtgacatgacaccaagatatgactctaatgcag tgtcatgtacattagaaatggaagtagtagatgacagtatgaactccagcttggccaaagagatgccacattctgagaat tttacaaggagttcactacacaggtctgatcttcctacagagaaaccagcatcagaacaagagttagaatcccacaaaga tcatgaacaatcagtaaatagtaacaagcagaacgagaatgtcttatctctcaccacggtgacatctttatctaacaaac tctcagtatcacaagctgtcgatagaaataatgcagcaggtgaaataaaccaaagcagaatctctgtacaacaagcagat aaaacacctaccagcagtcaggggctggatttgtcttcaaatgtacaatcacagggagcacctgccattctacaacatat agctagagcacctgctccagttcaacagccagtaggtatgtcagcaactggaacacctttcaatgtacaacaaacatatg gggcagcaacatgtgttctacaacctgttcaagcacctgtacatattcagccagcattgggcgtagcatcaagtatggta cctactagtgttcaacagacgggtatggctccagcacatgttcaacaggtgattggatcggcagcaactggagtattctc aaatgtacaaccaatctatggggcacctgctactctccatggaactcacctaacacccttaaatgctcagcaaagctttg gggcacctaatgtacaacggatacatctacatcaaccaccagcaaatatacagaatacagtcagagcacctgtttggcaa aatttgccaagtgagaaaaggaaagatcaaagaaatgaagctgggaacaaaaagtcatcatctgaggtagaactgattga cttgacgacgagacaagaagatgataacagtgggatcacctgtaagaaaaggaatcctggaggccagtatgaattgatac gaatgaaccagggtgactctgggtctacgtcagaagcagataatgactgtcagtgtccaaaatgcacaaagatgccacat attaaacgtccaatgaatgcctttatggtatgggcccagagggaacgtaaaaaaatctttacagagtcaccaaccatgca caactctgaaatcagcaaaatcctaggaaccaagtggaaaaccttaacgaaaactgaaaaggaaccatactacaaggaat cacaacgactcattctcattcataggcaaaatcatccagattataaatacagaccaagaagaggagaaaaagatgcaaga aaaagtgtcaaattggcttacaaacaggagctgtggaagagattcaaagaacagtatatgcctcatcaataa |
|
Protein
| Protein ID | pfu_aug2.0_28.1_26681.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_28.1_26681.t1 MGHYQKFYTNQIYSSSLLCQLAYMWRNDVLCDAVIWSGVISVKAHRVLLIASCPMLQSMESSTVGSQLEVRLAADIKEKS INTFLQYLYEGFMLLTEENCRDIEKIGRLLQVDSVIQCCADFHKSIDTKRNFSGNGSGYRFGFHDMHDVECLAEDNIQIL ETDQDSGTSGTGVGVHVMSKTSDLDDSDLIYLDMDESSNESRGDMTPRYDSNAVSCTLEMEVVDDSMNSSLAKEMPHSEN FTRSSLHRSDLPTEKPASEQELESHKDHEQSVNSNKQNENVLSLTTVTSLSNKLSVSQAVDRNNAAGEINQSRISVQQAD KTPTSSQGLDLSSNVQSQGAPAILQHIARAPAPVQQPVGMSATGTPFNVQQTYGAATCVLQPVQAPVHIQPALGVASSMV PTSVQQTGMAPAHVQQVIGSAATGVFSNVQPIYGAPATLHGTHLTPLNAQQSFGAPNVQRIHLHQPPANIQNTVRAPVWQ NLPSEKRKDQRNEAGNKKSSSEVELIDLTTRQEDDNSGITCKKRNPGGQYELIRMNQGDSGSTSEADNDCQCPKCTKMPH IKRPMNAFMVWAQRERKKIFTESPTMHNSEISKILGTKWKTLTKTEKEPYYKESQRLILIHRQNHPDYKYRPRRGEKDAR KSVKLAYKQELWKRFKEQYMPHQ |
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