Gene
| Gene Model ID | pfu_aug2.0_28.1_26690 |
|---|---|
| Locus | scaffold28.1 : 374743 ... 381411 : - |
| To GenomeBrowser | scaffold28.1:374743..381411 |
| Genes list of scaffold | scaffold28.1 |
| Synonym | pfu_aug1.0_462.1_15071 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_28.1_26690.t1 | 3 | 1 | Ig_3 | 18 | 95 | 6.9e-12 | 45.6 | 2.3e-11 | 4.3e-08 | 33.5 |
| pfu_aug2.0_28.1_26690.t1 | 3 | 1 | I-set | 19 | 108 | 0.0 | 162.8 | 2.5e-27 | 4.7e-24 | 84.0 |
| pfu_aug2.0_28.1_26690.t1 | 3 | 1 | Ig_2 | 24 | 104 | 7.6e-29 | 99.6 | 4.4e-15 | 8.1e-12 | 45.1 |
| pfu_aug2.0_28.1_26690.t1 | 3 | 1 | V-set | 25 | 103 | 6.7e-13 | 48.5 | 8.2e-08 | 0.00015 | 21.6 |
| pfu_aug2.0_28.1_26690.t1 | 3 | 1 | ig | 33 | 93 | 2.6e-13 | 49.8 | 1.1e-10 | 2.1e-07 | 30.9 |
| pfu_aug2.0_28.1_26690.t1 | 3 | 2 | I-set | 126 | 195 | 0.0 | 162.8 | 1.3e-12 | 2.5e-09 | 36.8 |
| pfu_aug2.0_28.1_26690.t1 | 3 | 2 | Ig_3 | 128 | 168 | 6.9e-12 | 45.6 | 0.098 | 180.0 | 2.7 |
| pfu_aug2.0_28.1_26690.t1 | 3 | 2 | Ig_2 | 132 | 172 | 7.6e-29 | 99.6 | 5.0e-07 | 0.00092 | 19.2 |
| pfu_aug2.0_28.1_26690.t1 | 3 | 2 | V-set | 132 | 195 | 6.7e-13 | 48.5 | 0.00011 | 0.2 | 11.5 |
| pfu_aug2.0_28.1_26690.t1 | 3 | 2 | ig | 140 | 191 | 2.6e-13 | 49.8 | 0.0016 | 3.0 | 8.0 |
| pfu_aug2.0_28.1_26690.t1 | 3 | 3 | I-set | 204 | 291 | 0.0 | 162.8 | 3.5e-13 | 6.5e-10 | 38.7 |
| pfu_aug2.0_28.1_26690.t1 | 3 | 3 | Ig_2 | 206 | 283 | 7.6e-29 | 99.6 | 5.5e-11 | 1.0e-07 | 31.9 |
| pfu_aug2.0_28.1_26690.t1 | 3 | 3 | V-set | 214 | 281 | 6.7e-13 | 48.5 | 0.00082 | 1.5 | 8.7 |
| pfu_aug2.0_28.1_26690.t1 | 3 | 3 | Ig_3 | 230 | 278 | 6.9e-12 | 45.6 | 0.012 | 22.0 | 5.6 |
| pfu_aug2.0_28.1_26690.t1 | 3 | 3 | ig | 232 | 275 | 2.6e-13 | 49.8 | 0.003 | 5.6 | 7.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_28.1_26690.t1 | gi|524896814|ref|XP_005104878.1| | PREDICTED: LOW QUALITY PROTEIN: twitchin-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_28.1_26690.t1 | gi|749782254|ref|XP_011145303.1| | PREDICTED: LOW QUALITY PROTEIN: twitchin-like [Harpegnathos saltator] | 9.80909e-45 |
| pfu_aug2.0_28.1_26690.t1 | gi|759082279|ref|XP_011351017.1| | PREDICTED: twitchin-like [Cerapachys biroi] | 2.00386e-43 |
Transcript
| Transcript ID | pfu_aug2.0_28.1_26690.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_28.1_26690.t1 atgtatatgctcttatctgcattttcagaaaagacagagaacaatgacgatcccccggtgttttccactgagttgaaacc ccagaggctaacagaaggcgacaggttaaagctgacctgcacagttaaaggtagaccggaccctgacgtggaatggttct gtaatggacagttgttgaagaatgacgaggtgacacacataaagaaccgagctgggaggtgttctctggagatagatgag gttctatccgatgatgatggtacatatgtctgtaaagccatcaactctgccgggtcgtcatcgtcaaaaacaagtgtaca aattaggcgtaaaacgcccgtaaaggagaagataatggcgaaacaacctgatggaccccggtttatagctcaccctgctg gtgttatactaaaggatggagactctactgttatagaatgccgtatatcaggcgatccaggtgtacaatggtataaaggt accactctactgacggacagtgaagattttcgacatgagagaagtggcgacacctataaattagtcatagctgaagtctt cccagaagatggtgccatttataagtttccagatgaagaccctattggtccggtgttcgattcattccctctgtctagaa gcgtcgacgagggagcaccgttcaaaacatcctgtaaattagattcagcggacagagtgatttggagtaaagacggtaga gaaatccaagatacgggaagattccggtttgggcaggatggtaactttttcacatttgaaattcccgctgcacttgcaac agactccggacactacactgcgactgcgcaaaatagtaacggaacctctcaatgggcgtttactctccacgtgcctgtaa gctcctccccctgtgctgatatagatgtagtccagcttattaggtcgatgcagaattcgtga |
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Protein
| Protein ID | pfu_aug2.0_28.1_26690.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_28.1_26690.t1 MYMLLSAFSEKTENNDDPPVFSTELKPQRLTEGDRLKLTCTVKGRPDPDVEWFCNGQLLKNDEVTHIKNRAGRCSLEIDE VLSDDDGTYVCKAINSAGSSSSKTSVQIRRKTPVKEKIMAKQPDGPRFIAHPAGVILKDGDSTVIECRISGDPGVQWYKG TTLLTDSEDFRHERSGDTYKLVIAEVFPEDGAIYKFPDEDPIGPVFDSFPLSRSVDEGAPFKTSCKLDSADRVIWSKDGR EIQDTGRFRFGQDGNFFTFEIPAALATDSGHYTATAQNSNGTSQWAFTLHVPVSSSPCADIDVVQLIRSMQNS |
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