Gene
| Gene Model ID | pfu_aug2.0_28.1_26695 |
|---|---|
| Locus | scaffold28.1 : 407307 ... 413125 : - |
| To GenomeBrowser | scaffold28.1:407307..413125 |
| Genes list of scaffold | scaffold28.1 |
| Synonym | pfu_aug1.0_7452.1_60249 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_28.1_26695.t1 | 3 | 1 | I-set | 30 | 82 | 1.5e-09 | 37.5 | 2.2e-09 | 4.1e-06 | 26.5 |
| pfu_aug2.0_28.1_26695.t1 | 3 | 1 | fn3 | 38 | 74 | 5.9e-32 | 109.6 | 0.22 | 410.0 | 1.1 |
| pfu_aug2.0_28.1_26695.t1 | 3 | 2 | fn3 | 89 | 164 | 5.9e-32 | 109.6 | 1.0e-17 | 1.8e-14 | 53.5 |
| pfu_aug2.0_28.1_26695.t1 | 3 | 3 | fn3 | 189 | 273 | 5.9e-32 | 109.6 | 2.9e-18 | 5.4e-15 | 55.3 |
| pfu_aug2.0_28.1_26695.t1 | 3 | 2 | I-set | 242 | 272 | 1.5e-09 | 37.5 | 0.0024 | 4.5 | 7.2 |
| pfu_aug2.0_28.1_26695.t1 | 3 | 3 | I-set | 299 | 323 | 1.5e-09 | 37.5 | 0.059 | 110.0 | 2.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_28.1_26695.t1 | gi|684406039|ref|XP_009174649.1| | hypothetical protein T265_15051, partial [Opisthorchis viverrini] | 0.0 |
| pfu_aug2.0_28.1_26695.t1 | gi|392901020|ref|NP_001255601.1| | UNC-22, isoform f [Caenorhabditis elegans] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_28.1_26695.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_28.1_26695.t1 atggaagaggaaaactctgcttcaattgcgataaaatctttacagattataggacagaggattataggacagagggaggg taagctagaggatattcaatctggtgacggcataaagatcgacaatagtacaccaaagaaatcctccctcacctacagta accctgccagaaaggacaccggagaatataccgtcactgtcaccaataaacatggtgacgatagtgccgatatagaggtg gtggtactaggtcctccatctagacctgaaggtccactgaaggtcagtaatgtcaaacaagaccagatgaccttgaactg gaaggaacctacagacactggtggaacacctatagatggatacaacatcgagaagatggacaccaagaagggacggtggg agccggtgaaggaaggagtaaggggcaccaagtatactgtacctaaactacaggaaggacatgattatcagttcagagtg gtggcttctggtcccaatggtgacagtgaggcattagaaacagacaaacctacaaccgccagaaaaccatatgatgagcc attcccacccagtcagccacagtgtaaggagagagatagggaccatatcacaataacatggcagcccccagagaaagacg gaggggctccggtagagggatataatgtagagagaaaggaaccaaaatccaacaggtggactaaaatcaacaaagatctg gtacctggatgtgagtttacagacagcaaagttacagatggcaaagaatatcagtaccgcgtaacggcaactaacgaggc tggagagtcagaaccaagtctaccatcctctgccatagtggctaaaccaagtaaagaggctcccaaggtgaaccttgatg cgctgtttggtgccaaggagatccgcgtgaaagctggagaacctcttactatccctataggaatatctggagcaccgaca ccgacttgctcanacagtctgcagatattcctgtag |
|
Protein
| Protein ID | pfu_aug2.0_28.1_26695.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_28.1_26695.t1 MEEENSASIAIKSLQIIGQRIIGQREGKLEDIQSGDGIKIDNSTPKKSSLTYSNPARKDTGEYTVTVTNKHGDDSADIEV VVLGPPSRPEGPLKVSNVKQDQMTLNWKEPTDTGGTPIDGYNIEKMDTKKGRWEPVKEGVRGTKYTVPKLQEGHDYQFRV VASGPNGDSEALETDKPTTARKPYDEPFPPSQPQCKERDRDHITITWQPPEKDGGAPVEGYNVERKEPKSNRWTKINKDL VPGCEFTDSKVTDGKEYQYRVTATNEAGESEPSLPSSAIVAKPSKEAPKVNLDALFGAKEIRVKAGEPLTIPIGISGAPT PTCSXSLQIFL |
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