Gene
| Gene Model ID | pfu_aug2.0_281.1_03928 |
|---|---|
| Locus | scaffold281.1 : 207885 ... 216894 : + |
| To GenomeBrowser | scaffold281.1:207885..216894 |
| Genes list of scaffold | scaffold281.1 |
| Synonym | pfu_aug1.0_7255.1_02409 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| probable atp-dependent rna helicase partial | GO:0003918 GO:0004386 GO:0005524 GO:0006396 GO:0016604 GO:0044822 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_281.1_03928.t1 | 2 | 1 | RVT_1 | 8 | 125 | 1.4e-21 | 76.8 | 1.4e-24 | 7.1e-21 | 74.5 |
| pfu_aug2.0_281.1_03928.t1 | 1 | 1 | DEAD | 457 | 575 | 2.4e-29 | 101.9 | 9.3e-33 | 4.6e-29 | 101.0 |
| pfu_aug2.0_281.1_03928.t1 | 2 | 2 | RVT_1 | 509 | 536 | 1.4e-21 | 76.8 | 0.15 | 760.0 | -0.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_281.1_03928.t1 | gi|662217606|ref|XP_008482791.1| | PREDICTED: probable ATP-dependent RNA helicase DDX46, partial [Diaphorina citri] | 0.0 |
| pfu_aug2.0_281.1_03928.t1 | gi|675612168|ref|XP_008934802.1| | PREDICTED: probable ATP-dependent RNA helicase DDX46, partial [Merops nubicus] | 0.0 |
| pfu_aug2.0_281.1_03928.t1 | gi|241618030|ref|XP_002408280.1| | ATP-dependent RNA helicase, putative [Ixodes scapularis] | 0.0 |
| pfu_aug2.0_281.1_03928.t1 | gi|119582643|gb|EAW62239.1| | DEAD (Asp-Glu-Ala-Asp) box polypeptide 46, isoform CRA_b [Homo sapiens] | 0.0 |
| pfu_aug2.0_281.1_03928.t1 | gi|488581028|ref|XP_004475953.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_281.1_03928.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_281.1_03928.t1 atgaacttctttgagaaacatgacatcctaaccgattaccaacatgggtttaggaaaaagagatcatgtgaatcccaact gataacaacaatccaggacctagctatgggcatagagaacaacatacaaattgatgcagtgctgttggacttctccaaag cttttgataaggtcccccatgagaggttgcttaccaaactacaccactatggtgtacgcggcaacctgctaaactggatc cggagcttcttatctggacgcacacagtgtgtattggtagaaggccattcctcttcaaccacaccagtcacttctggggt gccacaaggaatggtcctcggtcttctgttatttctggcatacattaacgacctacctggtcttaccgtcataggtctcg ttctcgaagtttgtcaagagaaagagagagaaagaagaaaaggagcagatctcgtagtcctcggagaagatccagatcta gagataggtcaaggaggtccagagaaagagaaagaagaagatcaaggtcaagggaaagaaaaaggtcaaggtcacgagaa agaagaagatcaaaatccagggaaagaagacgttctcgttctagggagagaaaaagatcaaggtcaagagacagaaagcc ataccgcctttagcagttttgggtttattagtcccctaccggcaatgccgaaggggactcttagtttcctctcggtctgt ctgtctgcccgtccatccgtctgtccgtctgtcccanggaagaagaaccaacagttacagcccattaatatagccccagt cagtaagaaatggtcgttagaggacgaagacgatgatgatgaagaggaggagacaaaggaatcagggggagataatgatg acgaagtcgatccacttgatgcttttatgaacgaaataaacagtgaggtgaagactacagatatgtcaaatggagacaat aatccaggtgggaagaaagtgacgataataacaggtgtagcaaagaagaaggtagatcctgagaaacagaaaggggagtt aatggagagtaatgttgatgccatggagtactcatcagaagaggaagaagaagacctagatacaaccatggctaaaatga acaagaaaaaggagggattagtggtaaaccatgacaagatttactacgccccatttaggaaaaacttctatgttgaggta cctgaaatagcaagattaacaaatgaagaggtggatgcttatagagaagagttagaaggaataaaggtacgaggaaaaaa ttgtcctaaaccaataaaaagctgggctcaatgtggagtcagtaaacgtattatggaggtcttcagaaaacaaggttttg agaagcccacacccatccaggctcaggccatcccagctgttatgtcaggtcgtgatctgataggtatagctaagactggt agtggtaaaaccctcgcattcctcgttcctttgtttcgtcatgtgatggaccaagctcccctggacgaagaggatggccc tattgtggtaataatgactcccaccagagagcttgccctacagattacatcagagtgtaagaaattctccaaagccctcg gtctgaaggctgtatgtgtgtatggaggtactggaatctctgagcaaatagccgagctgaagagaggctgtgaaatcatt gtatgcactcctggcaggatgatcgatatgttatcagccaacaatggcgggtattgtatcgatattttctatactgtgat tttcacttctttcaatagcaatatagtatctgagtag |
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Protein
| Protein ID | pfu_aug2.0_281.1_03928.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_281.1_03928.t1 MNFFEKHDILTDYQHGFRKKRSCESQLITTIQDLAMGIENNIQIDAVLLDFSKAFDKVPHERLLTKLHHYGVRGNLLNWI RSFLSGRTQCVLVEGHSSSTTPVTSGVPQGMVLGLLLFLAYINDLPGLTVIGLVLEVCQEKERERRKGADLVVLGEDPDL EIGQGGPEKEKEEDQGQGKEKGQGHEKEEDQNPGKEDVLVLGREKDQGQETESHTAFSSFGFISPLPAMPKGTLSFLSVC LSARPSVCPSVPXKKNQQLQPINIAPVSKKWSLEDEDDDDEEEETKESGGDNDDEVDPLDAFMNEINSEVKTTDMSNGDN NPGGKKVTIITGVAKKKVDPEKQKGELMESNVDAMEYSSEEEEEDLDTTMAKMNKKKEGLVVNHDKIYYAPFRKNFYVEV PEIARLTNEEVDAYREELEGIKVRGKNCPKPIKSWAQCGVSKRIMEVFRKQGFEKPTPIQAQAIPAVMSGRDLIGIAKTG SGKTLAFLVPLFRHVMDQAPLDEEDGPIVVIMTPTRELALQITSECKKFSKALGLKAVCVYGGTGISEQIAELKRGCEII VCTPGRMIDMLSANNGGYCIDIFYTVIFTSFNSNIVSE |
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