Gene
| Gene Model ID | pfu_aug2.0_281.1_03930 |
|---|---|
| Locus | scaffold281.1 : 222575 ... 234576 : + |
| To GenomeBrowser | scaffold281.1:222575..234576 |
| Genes list of scaffold | scaffold281.1 |
| Synonym | pfu_aug1.0_19269.1_03993 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| probable atp-dependent rna helicase ddx46 | GO:0004386 GO:0005524 GO:0005730 GO:0008152 GO:0044822 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_281.1_03930.t1 | 1 | 1 | Helicase_C | 107 | 181 | 3.3e-21 | 74.9 | 2.6e-24 | 6.4e-21 | 73.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_281.1_03930.t1 | gi|676485053|ref|XP_009063537.1| | hypothetical protein LOTGIDRAFT_130484 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_281.1_03930.t1 | gi|524877799|ref|XP_005095597.1| | PREDICTED: probable ATP-dependent RNA helicase DDX46-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_281.1_03930.t1 | gi|736176311|ref|XP_010767349.1| | PREDICTED: probable ATP-dependent RNA helicase DDX46 isoform X2 [Notothenia coriiceps] | 0.0 |
| pfu_aug2.0_281.1_03930.t1 | gi|573888143|ref|XP_006631842.1| | PREDICTED: probable ATP-dependent RNA helicase DDX46-like [Lepisosteus oculatus] | 0.0 |
| pfu_aug2.0_281.1_03930.t1 | gi|736176308|ref|XP_010767348.1| | PREDICTED: probable ATP-dependent RNA helicase DDX46 isoform X1 [Notothenia coriiceps] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_281.1_03930.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_281.1_03930.t1 atgtttgatatgggctttgaaccacaggtgacaaagatcatagacagtgtacgtcctgatcgtcagactgtcatgttctc ggctaccttccccagacagatggaggctctggccaggaagatactgaacaaacctatagaagtccaggtgggaggcagga gtgtggtgtgtaaggacgtcgaacaacatgtgataattatcgatgaagataagaagttcctgaagttgttagagttacta ggtatataccaggagcgaggcagtgttttagtgtttgtagataagcaggaacatgctgatgagttaatgaaggagttact aactcactcctacccgtgtatgtctctacatggaggtatagaccagtatgacagggattctactatagtagacttcaaaa acggaaacgtcaaactactggtagctacatcagtggcagctcgaggtttagacgtacgacatctgatcctggtaattaat tataactgtccaaatcactacgaggactacgtacacagatgtggtcgtactggtagagcgggaaataaaggtttcgcttt taccttcataacaccagaacaggagaggtatgcaggggacataatcaaagctttagaactctcaggaactgaagtaccct cagatttggagaagttgtggaatgactacaaggaaaaagccaaactggagggaagaacagttaaaagttccagcggcttc cttggtaaaggatttaagtttgatgagacagaggctcagctggctaacgagaggaagaagcttcagaaggcggcacttgg tctacaggactctgatgatgaggactcggctgtagacattgaccagcagatagaggatatgtttgccagtgttaagcgtg tgacggatgtcagtaaacctcagatattcaatccacaagttccgtctggaggaggaggcggaatgtctaaccagattaaa ctagccctagcaaaacaattggcagctaaaatcaacatggcaaagaaaataggaggggactctaaagacatcacacaaca ggcagctaaagctatatttgtaggagaaggagctgttccagaagtagctcccaaaacagtagcagagcagctagcagaga agattaatgctaagcttggttaccgtccagctaccgaagacgaggatgcagagaacagtaatgccgagacatttaaacga tatgaggaggaactggaaataaatgatttcccacagaccgcaagatggaaagttacatcaaaggaggcgttagctcagat atgtgaatactctgaggcagggataacagtgagggggacctatgtccctcccaaacaggaacccaaggagggagagagga aactttacctagctatagaagctactagtgagatggccatacagaaagctaaaaaagaaatcacacgactcatcaaggaa gaacttatacgactgcgatggtccaggcttaaatttgaatatttgaagaactttgctatagaaatgacctacaatgtatg gcaaagatcgttagaaggacagattgaggtacacagatcatcgtaa |
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Protein
| Protein ID | pfu_aug2.0_281.1_03930.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_281.1_03930.t1 MFDMGFEPQVTKIIDSVRPDRQTVMFSATFPRQMEALARKILNKPIEVQVGGRSVVCKDVEQHVIIIDEDKKFLKLLELL GIYQERGSVLVFVDKQEHADELMKELLTHSYPCMSLHGGIDQYDRDSTIVDFKNGNVKLLVATSVAARGLDVRHLILVIN YNCPNHYEDYVHRCGRTGRAGNKGFAFTFITPEQERYAGDIIKALELSGTEVPSDLEKLWNDYKEKAKLEGRTVKSSSGF LGKGFKFDETEAQLANERKKLQKAALGLQDSDDEDSAVDIDQQIEDMFASVKRVTDVSKPQIFNPQVPSGGGGGMSNQIK LALAKQLAAKINMAKKIGGDSKDITQQAAKAIFVGEGAVPEVAPKTVAEQLAEKINAKLGYRPATEDEDAENSNAETFKR YEEELEINDFPQTARWKVTSKEALAQICEYSEAGITVRGTYVPPKQEPKEGERKLYLAIEATSEMAIQKAKKEITRLIKE ELIRLRWSRLKFEYLKNFAIEMTYNVWQRSLEGQIEVHRSS |
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