Gene
| Gene Model ID | pfu_aug2.0_281.1_03944 |
|---|---|
| Locus | scaffold281.1 : 581910 ... 601264 : + |
| To GenomeBrowser | scaffold281.1:581910..601264 |
| Genes list of scaffold | scaffold281.1 |
| Synonym | pfu_aug1.0_5349.1_59759 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_281.1_03944.t1 | 2 | 1 | TROVE | 29 | 77 | 1.9e-36 | 125.6 | 0.11 | 1700.0 | -2.6 |
| pfu_aug2.0_281.1_03944.t1 | 2 | 2 | TROVE | 107 | 407 | 1.9e-36 | 125.6 | 3.1e-39 | 4.7e-35 | 121.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_281.1_03944.t1 | gi|530640327|ref|XP_005306930.1| | PREDICTED: 60 kDa SS-A/Ro ribonucleoprotein [Chrysemys picta bellii] | 0.0 |
| pfu_aug2.0_281.1_03944.t1 | gi|640803547|ref|XP_008058137.1| | PREDICTED: 60 kDa SS-A/Ro ribonucleoprotein [Tarsius syrichta] | 0.0 |
| pfu_aug2.0_281.1_03944.t1 | gi|557020409|ref|XP_006010529.1| | PREDICTED: 60 kDa SS-A/Ro ribonucleoprotein isoform X1 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_281.1_03944.t1 | gi|725592706|ref|XP_010347053.1| | PREDICTED: 60 kDa SS-A/Ro ribonucleoprotein [Saimiri boliviensis boliviensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_281.1_03944.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_281.1_03944.t1 atgaatccaggacaagaaaggattgatggatccgatttcgaagaaccaatggaagtggaagttccagtatcggcactaag aaaacgagatgttgacaaattatggaatttcctcatgtacggttgtccacggaccaacgtacacattccacagaatcgtg atttagaagacaaagtagtggatgtcattctaagactgattgcactaggagctggtgagactgtgattgatggtatccgt aaagctgccacgggtcatggaaaaagagatgatagtgatcatacgttagacgactccccagctacctgtctgaagtatcc agtactgtatgctctggctgtgtgcattaaaagcaataatcctgccaccaaaaagaaggcgtatgattgcttgttggaag tatgtacgataccatcctatctcttcttatttttatttctgtactacagaatgtgccttaatgaggcagcacaaataagt gaacaccctaaaaaaccatcctggcctaaaagcttcaggaaaactatcaagaaatggtacacacaatttgatccactgaa gctggcacaccttgttactaaatataggagcagatatggctggagtcacaaaaaagtcctcagacttgctcacattggtc atgatagagtggatagtagagatagaggatttgtcataaagtacatactgtcaggactactagaggccaaaaatacatat gatcaggatccagatccaaaagtgacggaagtaagggagtaccttgaagctgtggaatatgtcaggagatttgactaccg taaagaagaggacggctcagagggtctcaagacacttctagagaagataaagataaatgagttagcatgggagcatgtac agacatatgtcttgaaatctcctttaatctggaggactcttctggtaacaatgccacctctagccttgatcagaaacttg tccagactctcataccttgggcttcttactcctggctcaaatgagccaacaatagaggagaggattgtgtgtgagcgtct tcagaagagagatgctttacttgcagctaaaattcatcctatgaccattctcatagcaatatccagatatacaacaggac aaaaccagagaaacaagagatggccaataaatgaggctgtgcgcagatgtctatgggcagctttctgtacttcatatgaa atgtttcatccaacagggaaaaacctcctagtagcccttaatatcaacacaagaatgttatgtccagtcatagcatcccc tgctctctcctccaagatggctgcagtggccatagccaagattttccatgaagtagaaggaaaccaaagagttaattgca tcaaatttgattcaagtagtgaagctgttgacatgacacgagatgtggtcacaattactgaaactttcccaagggtagag ggacaaactgacttcactgttccctttaaatacgctagaaatggaggactaaatgttgatgcctttgtaattttgtctga ctttgtcaatgatgatcagattggcaaattgagggaaggtctgtctgattactgtgcccagcatgttggaagaagaataa agttggtgattataggactgaccagcacggagctaagtgaggttgatccagagggagaggagaacttgctagttgtacct ggtattgacattaactccttgaggaaagtcacagatttcatagcattggaattagacactgagaatgcactgtaccaaat gttacaaagtctcaacatagtcactagagtgttacctcgttga |
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Protein
| Protein ID | pfu_aug2.0_281.1_03944.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_281.1_03944.t1 MNPGQERIDGSDFEEPMEVEVPVSALRKRDVDKLWNFLMYGCPRTNVHIPQNRDLEDKVVDVILRLIALGAGETVIDGIR KAATGHGKRDDSDHTLDDSPATCLKYPVLYALAVCIKSNNPATKKKAYDCLLEVCTIPSYLFLFLFLYYRMCLNEAAQIS EHPKKPSWPKSFRKTIKKWYTQFDPLKLAHLVTKYRSRYGWSHKKVLRLAHIGHDRVDSRDRGFVIKYILSGLLEAKNTY DQDPDPKVTEVREYLEAVEYVRRFDYRKEEDGSEGLKTLLEKIKINELAWEHVQTYVLKSPLIWRTLLVTMPPLALIRNL SRLSYLGLLTPGSNEPTIEERIVCERLQKRDALLAAKIHPMTILIAISRYTTGQNQRNKRWPINEAVRRCLWAAFCTSYE MFHPTGKNLLVALNINTRMLCPVIASPALSSKMAAVAIAKIFHEVEGNQRVNCIKFDSSSEAVDMTRDVVTITETFPRVE GQTDFTVPFKYARNGGLNVDAFVILSDFVNDDQIGKLREGLSDYCAQHVGRRIKLVIIGLTSTELSEVDPEGEENLLVVP GIDINSLRKVTDFIALELDTENALYQMLQSLNIVTRVLPR |
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