Gene
| Gene Model ID | pfu_aug2.0_281.1_03947 |
|---|---|
| Locus | scaffold281.1 : 648146 ... 653139 : - |
| To GenomeBrowser | scaffold281.1:648146..653139 |
| Genes list of scaffold | scaffold281.1 |
| Synonym | pfu_aug1.0_143896.1_21232 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_281.1_03947.t1 | 1 | 1 | Asp_protease_2 | 18 | 106 | 7.5e-06 | 26.3 | 9.6e-09 | 2.0e-05 | 24.9 |
| pfu_aug2.0_281.1_03947.t1 | 1 | 1 | rve | 462 | 575 | 6.3e-25 | 87.6 | 5.5e-28 | 1.2e-24 | 86.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_281.1_03947.t1 | gi|339258158|ref|XP_003369265.1| | putative integrase core domain protein [Trichinella spiralis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_281.1_03947.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_281.1_03947.t1 atgcaagcaaaacaatgttctctgaaatctttaagttatgatggagtctatgtacaaggaaaattaaatggcatcaaaat catttacacagcagacacaggagccacaaaaactgttatttctaggaggagttatttaaagattcctgagggaagacgtc ccacattgacaaaatgtactgacacaattacgggagccggaggaaaacctatacagaagatgggaaaggctaaatttgaa atagaattgggtcccctttgctttcaacgagagcttgttatagcaaacattgaagatgatgccctacttgggatagacat tttacaaaatgaagaaggaggagcagcagatatattactgagtgagggtattataaagttcatgggaaaatctatccctt gtattcagatagggttacctggaagggagaggagagttactgcaagtcaaagttaccacattccaccttattctgagatg gttattaatgcagaaattgagcggaatgaagaagaacatcatgatctaatcattgagccgtctgaaaatttcaaaaagaa ttgcaacttactgatggcctcaacagttgtgaatattgctcagaagatgacagcgccggttagggttctgaatcccttct ctcacgaagttgtactttatgcaaatactaccattggtgtcgcaggagaatgtctggtgacaagtgagcctctggttgag aatgaagacgcctcagaggaagaaaatctgcaacctgtaaggcgaataaaattatcaaggaatgttgatcctaaggtgga atattcagctaattctgatgaaatacatgtaccagcacatttagaacaattgtataaagatgcaggaccttcttgcaata aacgagagaaagaggatgtagctcaactgcttattcgaaatgaagacatattttcaaagcgagacctagacattgggtta tgtacactgggtgaacatgtgattgacacaggtgatagcaaaccaataaagcaaccttccaggcgtgtacctttggctac ggcaaatgaagaaaaggaaactatacaaaaattagaggaatgcggcattatcaagaagtcaatttcaccctgggcatccc ctgtggttttagttcgcaagaaatctggaggtctacgacttatcacacccaagaaactacaaccagccattctgttccac aatcacgattccatgatgtcttgtcacttaggagccaacagaacttggaagaagacacgtgcaaaattttactggtacga aatgagagaagatattgcaatatacgtacagaaatgtgacaactgtgctgtaaacaaacctttacctaagtcacccaaaa gtccccttggatcaatgctggttagtgccccattagatcgactggccatagacatcatgggtccattaccccgtaccaag cgtggaaacagatacattttagtcatcatcgactgctttacaaagtgggtcgagatatttcccattatggaccaaactgc tccgacatgtgccgaccggctaatggatgttatctgtaggtttggctgccctctatccattcattctgaccagggacgta cctttgaaagtgacatatttaaagaattatgtgccatgttggaaataagaaagacaaggtcttcaccaagaaatccaaaa tgcaatggaactgtagagcgttttaacaaaactttgacgactatgattagagcatacattagggaggaagaaacggaatg ggatctaaatttagactgtctggcagctgcatatcgggcaaccccatgtgcctcaacaggcctgtcacctaacttcttaa tgttaggaagggaagtctgcctcccggtagatatcatatttggtcaaccaaaatcttatgagggaaatataataacaaag ggaagttacctgcaggagctccgtgagaaaatgaataaagcccatgctatcgccaggaaacatcttcagcaatctgcaaa ttatcacaagtgtcgttatgatcagaaggcatctataagtccatacaatcaaggagattatgttttgtacctgcacgaag agagaaaagaaggggagtgtagtaagctgcaccctctgtatcatggaccctttgttgttgtccaaagaatcaatgattta gtttatcgaatccaaatggattctcaagggaagatgaaagtggtcaattacaacaaactaaaaccctataaaggagaaaa gctaccaaaatggggtcaatctgctgtcaaaaatgcagagaaggcccggaccttgagacactatatctcagaacatgtgg accatcaggaggcaccattcacatgcagcctctgtaaatgtagaacatacagtgaagcaagtgttcggcagcacattaca tggtttttgaagcacagacggttggctaggaagttgaacccaacagacccgtcaaaagcaccatgggacattattgtatc acagacaccctactcattcaatttcatgaccgatgtcgttgcgtgtacacaggtggagagttccctcatctgggaaatga gaaaaagaatcaaagtaccgactgcaactgtcacatctgctgttgctaaccagagggaggttgttttagcgaatagcatt cctatcccagaggaaaaggaacatacatcagtcatctctacaacattgccttctttaaccgttgtatcatcgttacctat atcatccactgttcagtgtgtatcatctcagtctacattagggtctttgcctgcagttgttgtgcccactgtttcatctg ctgtaccatctaccgtgttgtcaactgtttcgtctgctgtatcatctactgtgtcgtcaactgtatcgtctgctgtatca tctactgtgtcgtcaactgtatcgtctgccgtatcgtctactgtttcgtctgctgttttgtctgctgtatcgtctgttac accagtggatgaacaagaagtagaagatctgacagaacagttgttacgaaaagagagtgactttgaagatgagagattag atgaaccacctaaaaaaagaaaaagacaggattcaacctcctcctcctcgtcatcctcgtctaaatcatcttcgtcatca cagttgttagctcagatgcagaccttgtcagccaatattaggagtgtagggatcgataatgcatacgaactaaggcgtat ggaaaagaatatagaagaaaacaacaagctaatgaaggaacaaaataggttgctgagggagatggttgggcttctcagga ataacaacaggagcaggtccccagtcgcctccacacgccccagatctgttctcggaggtatctatcgatggaatcaatca tcttcttacaataatcgccgccaaactggaaatcacagaaacagaaagtaa |
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Protein
| Protein ID | pfu_aug2.0_281.1_03947.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_281.1_03947.t1 MQAKQCSLKSLSYDGVYVQGKLNGIKIIYTADTGATKTVISRRSYLKIPEGRRPTLTKCTDTITGAGGKPIQKMGKAKFE IELGPLCFQRELVIANIEDDALLGIDILQNEEGGAADILLSEGIIKFMGKSIPCIQIGLPGRERRVTASQSYHIPPYSEM VINAEIERNEEEHHDLIIEPSENFKKNCNLLMASTVVNIAQKMTAPVRVLNPFSHEVVLYANTTIGVAGECLVTSEPLVE NEDASEEENLQPVRRIKLSRNVDPKVEYSANSDEIHVPAHLEQLYKDAGPSCNKREKEDVAQLLIRNEDIFSKRDLDIGL CTLGEHVIDTGDSKPIKQPSRRVPLATANEEKETIQKLEECGIIKKSISPWASPVVLVRKKSGGLRLITPKKLQPAILFH NHDSMMSCHLGANRTWKKTRAKFYWYEMREDIAIYVQKCDNCAVNKPLPKSPKSPLGSMLVSAPLDRLAIDIMGPLPRTK RGNRYILVIIDCFTKWVEIFPIMDQTAPTCADRLMDVICRFGCPLSIHSDQGRTFESDIFKELCAMLEIRKTRSSPRNPK CNGTVERFNKTLTTMIRAYIREEETEWDLNLDCLAAAYRATPCASTGLSPNFLMLGREVCLPVDIIFGQPKSYEGNIITK GSYLQELREKMNKAHAIARKHLQQSANYHKCRYDQKASISPYNQGDYVLYLHEERKEGECSKLHPLYHGPFVVVQRINDL VYRIQMDSQGKMKVVNYNKLKPYKGEKLPKWGQSAVKNAEKARTLRHYISEHVDHQEAPFTCSLCKCRTYSEASVRQHIT WFLKHRRLARKLNPTDPSKAPWDIIVSQTPYSFNFMTDVVACTQVESSLIWEMRKRIKVPTATVTSAVANQREVVLANSI PIPEEKEHTSVISTTLPSLTVVSSLPISSTVQCVSSQSTLGSLPAVVVPTVSSAVPSTVLSTVSSAVSSTVSSTVSSAVS STVSSTVSSAVSSTVSSAVLSAVSSVTPVDEQEVEDLTEQLLRKESDFEDERLDEPPKKRKRQDSTSSSSSSSSKSSSSS QLLAQMQTLSANIRSVGIDNAYELRRMEKNIEENNKLMKEQNRLLREMVGLLRNNNRSRSPVASTRPRSVLGGIYRWNQS SSYNNRRQTGNHRNRK |
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