Gene
| Gene Model ID | pfu_aug2.0_282.1_07286 |
|---|---|
| Locus | scaffold282.1 : 56125 ... 83165 : - |
| To GenomeBrowser | scaffold282.1:56125..83165 |
| Genes list of scaffold | scaffold282.1 |
| Synonym | pfu_aug1.0_3716.1_16154 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| general transcription factor iih subunit 1 | GO:0004672 GO:0005654 GO:0006355 GO:0006366 GO:0043234 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_282.1_07286.t1 | 1 | 1 | TFIIH_BTF_p62_N | 10 | 81 | 1.2e-16 | 60.1 | 1.4e-19 | 2.5e-16 | 59.0 |
| pfu_aug2.0_282.1_07286.t1 | 2 | 1 | BSD | 108 | 149 | 1.9e-26 | 91.5 | 2.3e-12 | 4.3e-09 | 35.9 |
| pfu_aug2.0_282.1_07286.t1 | 2 | 2 | BSD | 157 | 213 | 1.9e-26 | 91.5 | 1.1e-17 | 2.1e-14 | 52.9 |
| pfu_aug2.0_282.1_07286.t1 | 2 | 1 | XRCC4 | 326 | 327 | 3.3e-38 | 131.4 | 2.5 | 4700.0 | -3.9 |
| pfu_aug2.0_282.1_07286.t1 | 2 | 2 | XRCC4 | 630 | 904 | 3.3e-38 | 131.4 | 1.79997e-41 | 3.3e-38 | 131.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_282.1_07286.t1 | gi|585652251|ref|XP_006814889.1| | PREDICTED: general transcription factor IIH subunit 1 [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_282.1_07286.t1 | gi|507533590|ref|XP_004650856.1| | PREDICTED: general transcription factor IIH subunit 1 [Jaculus jaculus] | 0.0 |
| pfu_aug2.0_282.1_07286.t1 | gi|188035919|ref|NP_032212.3| | general transcription factor IIH subunit 1 isoform 2 [Mus musculus] | 0.0 |
| pfu_aug2.0_282.1_07286.t1 | gi|724857765|ref|XP_010368469.1| | PREDICTED: general transcription factor IIH subunit 1 [Rhinopithecus roxellana] | 0.0 |
| pfu_aug2.0_282.1_07286.t1 | gi|560974098|ref|XP_006209370.1| | PREDICTED: general transcription factor IIH subunit 1 isoform X1 [Vicugna pacos] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_282.1_07286.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_282.1_07286.t1 atggcctctcgatcagaagaggttttactaattgtgaatcacgtaaggaacaaaaagacagatggcacactgtatttgat gggagaaagactaggatggatgcagggcagtaaaagtactttttctatcagctacctctatgcagacatcaaagcgcaaa aaatatcaccagatttcaaagagaaagtacagcttcagctagtgttacatgatggcagtgctaacactctacactttaac aatccacatggacgtgatgacgccctcaaagatagggaaagtgtcaaagaactactacaacaactgttacctaagttccg taggaaactcaatagtgaactggaggaaaaaaacaagatgctacaggagaatccagagttatttcaactgtacaaagact tagttgttagtggagtcatcacagcagaggaattctgggcttctagggctgatataaagccccagacagacggatgtaat ggtttgaagtacaatctgacagctgatgttatagagtctattttcagaacttatccaatggttaagatgaagcatgctga gtttgtacctcaccagatgaccgaaaatgagttttggactcgatttttccagtctcactattttcatagagacagaacaa atatcagtaataaagatgtcttctcagaatgtgccaaaaatgatgagaaagagatgagtaatgaggtcagtaccaaggtc actgatcctttactggaccttactaagataacagactcgacactagatgatggttatggcttaaactcaggtgatagaaa agctagcaataaccaaaccaacttaacgatgatacgtcggtttaatcatcattctactatggttcttaaggcatgcaaaa aagactatggttcacaatctgccgaaaatgacggaagtgaaactcataatggacagacaatggtgaatggaactgttgaa acacagtccaagcataatagtaaaagtgaaacaaaagtcagtaaaacaaatgggcatactaatcataaagtaaatcacga tgatccaaggccgagtactagctctggacattctgatcagcaccatcataaacgaaaaaaaatcatcgaaaaaattcagt atgatgacttagtgaatcaggaagataggggtaaagtgaacttaactctccataaaatggaggggtatttacatggacct acgcctgttaaggtaatgagatacacttcaagtgaggatgtgattaaggccacgcagaaagtaacagaggagatgcagag ctggactccagatttatcaatggtgctgaatgggactaatgcaatacaaactctaggtgaattatcaccaggtggtgctc tgatgaaaggaacaagtaaccagcaactaaatcaaatgattcctatagaggttcaagatgcagtgaagtctcaatacaat gctttgttagaattattacgtcatttctggtcgtgttttcctgtttcgtccaaactcctggaagagaaggttgtaaaaat gaaatcaacattggaaaaattccaaatggcaaagttgaatccactgagagacaagttggagtatgagcattactctatga atgcaggtttccatgaaatgatccctatagaggttcaagatgcagtgaagtcacaatacaatgctttgttagaattatta cgtcatttctggtcgtgttttcctgtttcgtccaaactcctggaagagaaggttgtaaaaatgaaatcgacattggaaaa attccaaatggcaaagttgaatccactgagagacaagttggaatatgagcattactctatgaattcagaacttaccacca tgaagagtacagcattttcccaagtggagacaacagatggactaactctgtacttactgactactcactgcagtgatgat ttgtctgaagaatttaaaatcacacttactgacggaacaaaagtatggaaaagcattgtaacagaagataacttggacaa catgcgtaccaaagtgaagatggacatggagagttatgtagagaagacaaaggaggctctgactggggtcaagagttcag acgcagtattccattacaagttcaagacaaagaaagatcattctgtagagttcgcatggcagaaatttgttccagaacaa gatattgctctaggaagtacctcacttaaaacagcaaacagttcctcagatgaaatgtgccatatatttagatactgtat tgataaacagtccaaactattagaaagaattcagaacctggagacagataatgaacgactttcacaggacagaactaagg ctttaaagagattagagaaatgtgtagaagcaaaagaagaacttgaacaagacttatattcaaagtttgtagatatttta aacaacaaaaaagaaaagattagagaattgaaaagtcaaattgatagtggtggtactcctgtaatagctgaatctaaaga tgtgtcagactcagaggaacctagtacatcaaatggaacaaggaacacccagcagaagaggaaagccagggacaaagata gtgatgaagatacaacagatgatgaaaaggtatcaacaccaagcaaaagaggccgttataagaagtccacacccgataaa agtacggatgattctctggtgttagatgatggagatgacagtccttctagatcacctgtagccaggtcgactgagaagaa accaagcatgaaaaaatcaggatcaggttcatctagtcgctcctcagaacatttagatgctgatgctttactagatggac tttaa |
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Protein
| Protein ID | pfu_aug2.0_282.1_07286.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_282.1_07286.t1 MASRSEEVLLIVNHVRNKKTDGTLYLMGERLGWMQGSKSTFSISYLYADIKAQKISPDFKEKVQLQLVLHDGSANTLHFN NPHGRDDALKDRESVKELLQQLLPKFRRKLNSELEEKNKMLQENPELFQLYKDLVVSGVITAEEFWASRADIKPQTDGCN GLKYNLTADVIESIFRTYPMVKMKHAEFVPHQMTENEFWTRFFQSHYFHRDRTNISNKDVFSECAKNDEKEMSNEVSTKV TDPLLDLTKITDSTLDDGYGLNSGDRKASNNQTNLTMIRRFNHHSTMVLKACKKDYGSQSAENDGSETHNGQTMVNGTVE TQSKHNSKSETKVSKTNGHTNHKVNHDDPRPSTSSGHSDQHHHKRKKIIEKIQYDDLVNQEDRGKVNLTLHKMEGYLHGP TPVKVMRYTSSEDVIKATQKVTEEMQSWTPDLSMVLNGTNAIQTLGELSPGGALMKGTSNQQLNQMIPIEVQDAVKSQYN ALLELLRHFWSCFPVSSKLLEEKVVKMKSTLEKFQMAKLNPLRDKLEYEHYSMNAGFHEMIPIEVQDAVKSQYNALLELL RHFWSCFPVSSKLLEEKVVKMKSTLEKFQMAKLNPLRDKLEYEHYSMNSELTTMKSTAFSQVETTDGLTLYLLTTHCSDD LSEEFKITLTDGTKVWKSIVTEDNLDNMRTKVKMDMESYVEKTKEALTGVKSSDAVFHYKFKTKKDHSVEFAWQKFVPEQ DIALGSTSLKTANSSSDEMCHIFRYCIDKQSKLLERIQNLETDNERLSQDRTKALKRLEKCVEAKEELEQDLYSKFVDIL NNKKEKIRELKSQIDSGGTPVIAESKDVSDSEEPSTSNGTRNTQQKRKARDKDSDEDTTDDEKVSTPSKRGRYKKSTPDK STDDSLVLDDGDDSPSRSPVARSTEKKPSMKKSGSGSSSRSSEHLDADALLDGL |
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