Gene
| Gene Model ID | pfu_aug2.0_282.1_07288 |
|---|---|
| Locus | scaffold282.1 : 94726 ... 107311 : + |
| To GenomeBrowser | scaffold282.1:94726..107311 |
| Genes list of scaffold | scaffold282.1 |
| Synonym | pfu_aug1.0_3716.1_16155 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_282.1_07288.t1 | 1 | 1 | G8 | 34 | 142 | 1.6e-23 | 82.8 | 7.2e-27 | 5.3e-23 | 81.1 |
| pfu_aug2.0_282.1_07288.t1 | 2 | 1 | Beta_helix | 420 | 570 | 1.8e-08 | 34.3 | 5.4e-08 | 0.0004 | 20.1 |
| pfu_aug2.0_282.1_07288.t1 | 2 | 2 | Beta_helix | 472 | 615 | 1.8e-08 | 34.3 | 6.5e-10 | 4.8e-06 | 26.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_282.1_07288.t1 | gi|504161682|ref|XP_004591824.1| | PREDICTED: transmembrane protein 2 isoform X1 [Ochotona princeps] | 0.0 |
| pfu_aug2.0_282.1_07288.t1 | gi|301612255|ref|XP_002935631.1| | PREDICTED: transmembrane protein 2 [Xenopus (Silurana) tropicalis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_282.1_07288.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_282.1_07288.t1 atgaggctagcatttgtttgcctgctagttcataccatttgggcccaagatgcatgtccgtacaaaaatagcaatcttgc actctggtcagatggaacgtggggcgatgatgccgtgattccagagggatctcatgttttgctggatgttgatgatgtgg acataaagagtattaccatagagaagggggccagcttagtgttcgatgacatcgaagctacagtgcgtgtaaactacatt ctggttaaaggaagcctgatattaggatcagagtcatgtccgttgacggctgatatagaaatcatactaaaaggggatcc caaggaatacacaatagatggtttcggagaaaagttcattggcgtagaacaaggaggaactctggaaatacacggggact acaagcttccatggaccaaactagattctacggtcaaacggttagaggatggaatggttgacaaactgaggaatcttccc cagttcatagatgacaagaaccatgatagatacaggggtctggctgtctatgttatggacccgacgaccggacagatcga ggatgaattttccgccaccacgggtatggagatgaaccaatgtctcaccgataaagctgccgaggaatttgaagagaaaa tgaacgcacttcccgatggcaagattgtagggattgctctcaagagacgtctcggagagggaagaaacctcgcgatgttt tatgaaattctagaaaagctggcgtttggttcggttaccaagatgacgaaaattcgacagtacaaattccacagtgcatg ggcaatgatatttaaaaaaggcgacccatcaaaaacgcaagaagatatcgtgtttgacgacggcgtggtcaaggaccgtg cagtggagttatatcttgttgagaatggaatgaagttctccatcagaagctgggtccacaccatacggcgtggagcttgt tactcggaggctaaagtcagtcaggccgacatatccatacctactataaaactggtggacgatgtggatacatggaagga aggagacaacgtcgtacttctgtctacagactttgacatgaagcaagccgaggaggctgttgtagcaccttgctcatcgt gtgcttccaatgagatacaagtcaacattgaaccgaagtttactcactttggtgaaatcgttcacaatgttgacatgcga ggtgaagtggcagtcctgaatcgtaacatcgttataagaggagaagagtcatcaaaaagcaatacatttggaggtcattt gaaggtactgagaggctttacagacgtgcacatagaaaatgcagagtttgtcaacatgggtcaacaggaatcaattggga attacccgatccatttccacatgtgtatggacgtagataattatacaagaccagcttacgtccgtggaaacagcatccat gacaccaaagccagatgtatcaccgtccatgggaccagcggattactagtcaaggataatgtatgttaccgttctctagg acacggatttttcctggaggatggtggagagaagagaacggtgtttgacgggaatctgggggcattaacaaacaggggca atctgattgtctctgatcgagtagctccatcaactttctggattacgaaccctaatacctatatgagaaacaacgtagca gcgggttcaatgtctataggaatttggttcttgtatcctgactacccattgggaccatcatcagatctcatgaaaaaatt cgaggcacaacataccgcagtgccagaattctacaataacgtggcacacagtaacgctaggagtggtctattctttgaga acaagctgagtcgtgacggcaaaccaggtgctcagaatagatatgagccttggaatgaccctctgaacaaaacatccggc gataagatggtcgtgtttgaaaagttcaccgcttacaagaatatcagacagaacgcatggattgacggggggctgattac tgtcaaaaagtcgtcgttctctgacagtgtcactggactgacctttgtcaggagttctccacaagtccagtttgtaacgg agagcgtgttccttggggattcccctaatatgggacagccatccataatcactgctctcagaacgtaccctagatctgtt cctctatccatgctctag |
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Protein
| Protein ID | pfu_aug2.0_282.1_07288.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_282.1_07288.t1 MRLAFVCLLVHTIWAQDACPYKNSNLALWSDGTWGDDAVIPEGSHVLLDVDDVDIKSITIEKGASLVFDDIEATVRVNYI LVKGSLILGSESCPLTADIEIILKGDPKEYTIDGFGEKFIGVEQGGTLEIHGDYKLPWTKLDSTVKRLEDGMVDKLRNLP QFIDDKNHDRYRGLAVYVMDPTTGQIEDEFSATTGMEMNQCLTDKAAEEFEEKMNALPDGKIVGIALKRRLGEGRNLAMF YEILEKLAFGSVTKMTKIRQYKFHSAWAMIFKKGDPSKTQEDIVFDDGVVKDRAVELYLVENGMKFSIRSWVHTIRRGAC YSEAKVSQADISIPTIKLVDDVDTWKEGDNVVLLSTDFDMKQAEEAVVAPCSSCASNEIQVNIEPKFTHFGEIVHNVDMR GEVAVLNRNIVIRGEESSKSNTFGGHLKVLRGFTDVHIENAEFVNMGQQESIGNYPIHFHMCMDVDNYTRPAYVRGNSIH DTKARCITVHGTSGLLVKDNVCYRSLGHGFFLEDGGEKRTVFDGNLGALTNRGNLIVSDRVAPSTFWITNPNTYMRNNVA AGSMSIGIWFLYPDYPLGPSSDLMKKFEAQHTAVPEFYNNVAHSNARSGLFFENKLSRDGKPGAQNRYEPWNDPLNKTSG DKMVVFEKFTAYKNIRQNAWIDGGLITVKKSSFSDSVTGLTFVRSSPQVQFVTESVFLGDSPNMGQPSIITALRTYPRSV PLSML |
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