Gene
| Gene Model ID | pfu_aug2.0_282.1_07291 |
|---|---|
| Locus | scaffold282.1 : 123696 ... 125345 : + |
| To GenomeBrowser | scaffold282.1:123696..125345 |
| Genes list of scaffold | scaffold282.1 |
| Synonym | pfu_aug1.0_1430.1_29724 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| 60 kda ss-a ro ribonucleoprotein | GO:0005488 GO:0005634 GO:0009987 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_282.1_07291.t1 | 1 | 1 | TROVE | 2 | 195 | 2.0e-29 | 102.5 | 1.9e-33 | 2.8e-29 | 102.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_282.1_07291.t1 | gi|617559131|ref|XP_007539805.1| | PREDICTED: 60 kDa SS-A/Ro ribonucleoprotein [Erinaceus europaeus] | 0.0 |
| pfu_aug2.0_282.1_07291.t1 | gi|432914315|ref|XP_004079051.1| | PREDICTED: 60 kDa SS-A/Ro ribonucleoprotein [Oryzias latipes] | 0.0 |
| pfu_aug2.0_282.1_07291.t1 | gi|560919907|ref|XP_006186173.1| | PREDICTED: 60 kDa SS-A/Ro ribonucleoprotein isoform X1 [Camelus ferus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_282.1_07291.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_282.1_07291.t1 atgagccacaaggacataatacgcctggctcacgtcaagcccaacagcagaactgtcgctttcgttctcaaatacttggc gaagggatatcaagccattcgtgagtattctaatcgtaatcttgaagccgatcaagaattgcaacaatcggtctgttttc tccgagcgacccatgatgctaaaagatgccaaagtgatcgtcatctgaaacaacttattgaaaaccaccgtctgacacac gagtttgtgccaagtgagaaattgagagaccctgagatatggaaaacacttttaccatttatgcctttccatgcactaat tagaaatttaggtcgaatgacagctgttggtgcgctctcaaaccaaaatgaaatcgagaggatacgactgcgactcggaa atagcgatgctgtaaggcaatctttcgtacatccttttcaattactaaatgcctttatgcactatgaaagtggagttagt gcccctgatgcaacagagaacttaggacggattacatggcgaccaaactctgatgtactcaaatcgctcgaagaagcatt ctatagctctctcgcagacataaattttattcgtccagttcagtgtaacattcagttggctttggatcttggactctcac ggggacaatgtgtcaatactgcggagtccttgccggtgtgcactgccgcttgggcactaatgctggcatttatacgaaca cagggtcattcgtgtaaagtccttgccttttctgcatcatcggttgtaccactgccgataactcgaaatgacaggctgac cgacatcgaacaacacttgataaatagtacaggcctaccgggcagtgatcggtctcccgatttgtcagcacctatcagat acgctgcttcaaggggacatgacattgacctattcatcattttgacaagctgcagtaaagggcgacttgtccagtctccc gaggaagcactcagtagttacagagccagcagacggaatcaggaggtgaagctagtagtggttataatgggaactgaacg ggcacataacttgtggaattctgacgatcctcgtattctcataatagaaggatttgatgccaatgtatttcatctgatca gagagtttgcaacttccttcgattga |
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Protein
| Protein ID | pfu_aug2.0_282.1_07291.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_282.1_07291.t1 MSHKDIIRLAHVKPNSRTVAFVLKYLAKGYQAIREYSNRNLEADQELQQSVCFLRATHDAKRCQSDRHLKQLIENHRLTH EFVPSEKLRDPEIWKTLLPFMPFHALIRNLGRMTAVGALSNQNEIERIRLRLGNSDAVRQSFVHPFQLLNAFMHYESGVS APDATENLGRITWRPNSDVLKSLEEAFYSSLADINFIRPVQCNIQLALDLGLSRGQCVNTAESLPVCTAAWALMLAFIRT QGHSCKVLAFSASSVVPLPITRNDRLTDIEQHLINSTGLPGSDRSPDLSAPIRYAASRGHDIDLFIILTSCSKGRLVQSP EEALSSYRASRRNQEVKLVVVIMGTERAHNLWNSDDPRILIIEGFDANVFHLIREFATSFD |
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