Gene
| Gene Model ID | pfu_aug2.0_282.1_07292 |
|---|---|
| Locus | scaffold282.1 : 131856 ... 139710 : + |
| To GenomeBrowser | scaffold282.1:131856..139710 |
| Genes list of scaffold | scaffold282.1 |
| Synonym | pfu_aug1.0_1430.1_29725 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_282.1_07292.t1 | 2 | 1 | TROVE | 32 | 171 | 1.9e-31 | 109.2 | 8.5e-15 | 6.3e-11 | 41.6 |
| pfu_aug2.0_282.1_07292.t1 | 2 | 2 | TROVE | 239 | 346 | 1.9e-31 | 109.2 | 3.9e-22 | 2.9e-18 | 65.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_282.1_07292.t1 | gi|632956239|ref|XP_007893860.1| | PREDICTED: 60 kDa SS-A/Ro ribonucleoprotein isoform X2 [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_282.1_07292.t1 | gi|591376762|ref|XP_007063047.1| | PREDICTED: 60 kDa SS-A/Ro ribonucleoprotein [Chelonia mydas] | 0.0 |
| pfu_aug2.0_282.1_07292.t1 | gi|632956237|ref|XP_007893859.1| | PREDICTED: 60 kDa SS-A/Ro ribonucleoprotein isoform X1 [Callorhinchus milii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_282.1_07292.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_282.1_07292.t1 atgggtgacagtccgattccagaaattgatctccttaggaggtgtttagtatttggacgggaccttggcatttctgggtc accgatcgtcgacaaaattcaggatttaatagataggctcggtgctgtcaaccatggtagcgagttgatagccttgttat tggagtatggcagggacgggcgtactctatcaaacgatcctctgatgttttgtctggctgcctgctctcacagtaacgat gaaattttgaaaagggccgctctgaccgccatgctgaacatttgcaaggacgccacgcccacttatttgttcagcttctt gcgcttccggagtaagatatgtggaaatagcggtcggtgggggagaggtttgcggtcagccatctccaagtattacaacg gttatagtgcagaccctatgaaactagccttacacgttacgaaattctataggcgttttggatggagtcatcgagacgta ttgcgacttgcgcatgttaagtcacgtgacttgagaataaattacatcttggcgtacattgcgagaggtttgcgatacgc tgacgaaaagtatccgaacacaaatggtgacgatgttttacagcaaataaaggactatataaatgttgtaaccagtgcgc gccgaggtcagtacgaagaagatggactatgtgaacaaattgccttgaaacagctagtccttcaacaaataagtacacaa gctttgagatcagccgttgtttgggaaacactcctcgtattgatgccgatgaaatgcatgctccggaatctgggaaagat ggcgtctctagatatatttgggtataataaacccgcagagaagggagtaatgatgtttctcaggtgtccagagaagatga aggactcaaaggtccacccaatcgacgtgcttgtagcccatcaccagtattgccaaggggttagtgggcgtcggcgaatc acatggacaccacgacagacaatcaaagatgagcttgaggaggcgttctttggttactttcgcgatatcgaatctacggg taaaaattatttgcttgccctggatttgggatgtaaacatacagaactagtcaagggaatatgtggagacttgaatatcg gcaaatatatagcatcgctggttctggctctacacagggtggaaaacaattgtcggaccgtagcatttggtactactgag gtggtatctctcgacattgataataatagccggatcgacaatatggacaatatttggcaaagagcttaa |
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Protein
| Protein ID | pfu_aug2.0_282.1_07292.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_282.1_07292.t1 MGDSPIPEIDLLRRCLVFGRDLGISGSPIVDKIQDLIDRLGAVNHGSELIALLLEYGRDGRTLSNDPLMFCLAACSHSND EILKRAALTAMLNICKDATPTYLFSFLRFRSKICGNSGRWGRGLRSAISKYYNGYSADPMKLALHVTKFYRRFGWSHRDV LRLAHVKSRDLRINYILAYIARGLRYADEKYPNTNGDDVLQQIKDYINVVTSARRGQYEEDGLCEQIALKQLVLQQISTQ ALRSAVVWETLLVLMPMKCMLRNLGKMASLDIFGYNKPAEKGVMMFLRCPEKMKDSKVHPIDVLVAHHQYCQGVSGRRRI TWTPRQTIKDELEEAFFGYFRDIESTGKNYLLALDLGCKHTELVKGICGDLNIGKYIASLVLALHRVENNCRTVAFGTTE VVSLDIDNNSRIDNMDNIWQRA |
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