Gene
| Gene Model ID | pfu_aug2.0_282.1_07294 |
|---|---|
| Locus | scaffold282.1 : 176480 ... 199453 : + |
| To GenomeBrowser | scaffold282.1:176480..199453 |
| Genes list of scaffold | scaffold282.1 |
| Synonym | pfu_aug1.0_270.1_07452 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| e3 ubiquitin-protein ligase siah1 isoform x1 | GO:0004842 GO:0005634 GO:0006511 GO:0007275 GO:0008270 GO:0016567 GO:0016874 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_282.1_07294.t2 | 2 | 1 | Sina | 49 | 70 | 0.0 | 237.4 | 1.1 | 4200.0 | -2.9 |
| pfu_aug2.0_282.1_07294.t2 | 2 | 2 | Sina | 77 | 258 | 0.0 | 237.4 | 0.0 | 0.0 | 237.4 |
| pfu_aug2.0_282.1_07294.t2 | 2 | 1 | Skp1_POZ | 174 | 184 | 3.6e-22 | 78.2 | 3.6 | 13000.0 | -3.7 |
| pfu_aug2.0_282.1_07294.t2 | 2 | 2 | Skp1_POZ | 255 | 317 | 3.6e-22 | 78.2 | 2.2e-25 | 8.2e-22 | 77.0 |
Transcript
| Transcript ID | pfu_aug2.0_282.1_07294.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_282.1_07294.t1 atggatgcatcttccactgccaatgtggaaaattcactaccacctggcttcccagtgggtgcaggcggtacatctagtaa tgcagatctagcttctctgtttgaatgtccagtatgcttcgactacgctcttcctcccataatgcaatgccaaagtggtc acatagtttgtcagcagtgccgatcaaaattatccatgtgtccaacatgtcgtggccctctaggaaatataagaaatcta gccatggagaaggtggcaagcactgtcatgtttccatgtaaatattcatccagtggttgtcccataacgttattacacac agacaaaacagatcatgaagaaacatgtgaattcagaccttactgttgtccatgtcctggagcatcatgtaaatggcagg ggtcactggaacaggtcatgacccacttaatgcagcaacacaaaagtattaccacactccaaggtgaggacattgtgttt ctggcaacagatataaatcttcctggtgctgtagactgggtcatgatgcagtcttgttttggtcacaactttatgttagt attggaaaagcaggaaaaaatggaggggcagcaaatattttacgccattgtacagctcataggcacgaggaaacaggcgg aaaactttgcttacagattagagttgaatggtcatcgacgcagactctcatgggaggccacaccacgcagcattcacgac ggtgtccaatcagccattatggcaagtgactgtctgatgcctaatataaagcttcagagtatcgaaggtcaactttttga tgttgatgtggagatagtacgacagtcagtcacaataaagacaatgttggaagatttgggagtagatgacgatgaggaag aagctgtgccattacctaatgttaacgctgctatcttgaccaaggtaattaactggtgcacataccacaaagacgaccca ccaccgcctgaagacgatgaaaataaggagaaacgcactgacgatattggctcatgggatgcagattttctcaaagtgga tcaaggaactctatttgagttgattttagcagcaaattacttggatattaaaggattattagatgtcacatgcaagactg ttgccaatatgatcaaaggaaaatctccagaggaaatcagaaagaccttcaatattaaaaatgatttcactcccgctgaa gaagaacaggtgcggaaggaaaatgaatggtgcgaggagaagtag |
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| Transcript ID | pfu_aug2.0_282.1_07294.t2 |
| Definition | - |
>pfu_aug2.0_282.1_07294.t2 atggatgcatcttccactgccaatgtggaaaattcactaccacctggcttcccagtgggtgcaggcggtacatctagtaa tgcagatctagcttctctgtttgaatgtccagtatgcttcgactacgctcttcctcccataatgcaatgccaaagtggtc acatagtttgtcagcagtgccgatcaaaattatccatgtgtccaacatgtcgtggccctctaggaaatataagaaatcta gccatggagaaggtggcaagcactgtcatgtttccatgtaaatattcatccagtggttgtcccataacgttattacacac agacaaaacagatcatgaagaaacatgtgaattcagaccttactgttgtccatgtcctggagcatcatgtaaatggcagg ggtcactggaacaggtcatgacccacttaatgcagcaacacaaaagtattaccacactccaaggtgaggacattgtgttt ctggcaacagatataaatcttcctggtgctgtagactgggtcatgatgcagtcttgttttggtcacaactttatgttagt attggaaaagcaggaaaaaatggaggggcagcaaatattttacgccattgtacagctcataggcacgaggaaacaggcgg aaaactttgcttacagattagagttgaatggtcatcgacgcagactctcatgggaggccacaccacgcagcattcacgac ggtgtccaatcagccattatggcaagtgactgtctgatgcctaatataaagcttcagagtatcgaaggtcaactttttga tgttgatgtggagatagtacgacagtcagtcacaataaagacaatgttggaagatttgggagtagatgacgatgaggaag aagctgtgccattacctaatgttaacgctgctatcttgaccaaggtaattaactggtgcacataccacaaagacgaccca ccaccgcctgaagacgatgaaaataaggagaaacgcactgacgatattggctcatgggatgcagattttctcaaagtgga tcaaggaactctatttgagttgattttagtaagtttgtaa |
|
Protein
| Protein ID | pfu_aug2.0_282.1_07294.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_282.1_07294.t1 MDASSTANVENSLPPGFPVGAGGTSSNADLASLFECPVCFDYALPPIMQCQSGHIVCQQCRSKLSMCPTCRGPLGNIRNL AMEKVASTVMFPCKYSSSGCPITLLHTDKTDHEETCEFRPYCCPCPGASCKWQGSLEQVMTHLMQQHKSITTLQGEDIVF LATDINLPGAVDWVMMQSCFGHNFMLVLEKQEKMEGQQIFYAIVQLIGTRKQAENFAYRLELNGHRRRLSWEATPRSIHD GVQSAIMASDCLMPNIKLQSIEGQLFDVDVEIVRQSVTIKTMLEDLGVDDDEEEAVPLPNVNAAILTKVINWCTYHKDDP PPPEDDENKEKRTDDIGSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKSPEEIRKTFNIKNDFTPAE EEQVRKENEWCEEK |
|
| Protein ID | pfu_aug2.0_282.1_07294.t2 |
| Definition | - |
>pfu_aug2.0_282.1_07294.t2 MDASSTANVENSLPPGFPVGAGGTSSNADLASLFECPVCFDYALPPIMQCQSGHIVCQQCRSKLSMCPTCRGPLGNIRNL AMEKVASTVMFPCKYSSSGCPITLLHTDKTDHEETCEFRPYCCPCPGASCKWQGSLEQVMTHLMQQHKSITTLQGEDIVF LATDINLPGAVDWVMMQSCFGHNFMLVLEKQEKMEGQQIFYAIVQLIGTRKQAENFAYRLELNGHRRRLSWEATPRSIHD GVQSAIMASDCLMPNIKLQSIEGQLFDVDVEIVRQSVTIKTMLEDLGVDDDEEEAVPLPNVNAAILTKVINWCTYHKDDP PPPEDDENKEKRTDDIGSWDADFLKVDQGTLFELILVSL |
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