Gene
| Gene Model ID | pfu_aug2.0_282.1_07299 |
|---|---|
| Locus | scaffold282.1 : 285190 ... 299909 : - |
| To GenomeBrowser | scaffold282.1:285190..299909 |
| Genes list of scaffold | scaffold282.1 |
| Synonym | pfu_aug1.0_270.1_07455 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| harmonin- partial | GO:0000086 GO:0001750 GO:0001917 GO:0005737 GO:0005886 GO:0005903 GO:0007605 GO:0030507 GO:0032029 GO:0032420 GO:0045177 GO:0045202 GO:0045494 GO:0048839 GO:0050953 GO:0050957 GO:0051017 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_282.1_07299.t1 | 2 | 1 | PDZ | 81 | 157 | 1.5e-29 | 101.9 | 1.1e-18 | 4.0e-15 | 55.7 |
| pfu_aug2.0_282.1_07299.t1 | 2 | 1 | PDZ_2 | 104 | 137 | 2.0e-08 | 33.9 | 8.2e-09 | 3.0e-05 | 23.8 |
| pfu_aug2.0_282.1_07299.t1 | 2 | 2 | PDZ | 215 | 283 | 1.5e-29 | 101.9 | 2.8e-15 | 1.0e-11 | 44.8 |
| pfu_aug2.0_282.1_07299.t1 | 2 | 2 | PDZ_2 | 230 | 272 | 2.0e-08 | 33.9 | 0.00076 | 2.8 | 7.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_282.1_07299.t1 | gi|676448922|ref|XP_009051887.1| | hypothetical protein LOTGIDRAFT_159301 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_282.1_07299.t1 | gi|719751175|ref|XP_010213015.1| | PREDICTED: harmonin, partial [Tinamus guttatus] | 0.0 |
| pfu_aug2.0_282.1_07299.t1 | gi|704275868|ref|XP_010155575.1| | PREDICTED: harmonin-like, partial [Eurypyga helias] | 0.0 |
| pfu_aug2.0_282.1_07299.t1 | gi|119588839|gb|EAW68433.1| | Usher syndrome 1C (autosomal recessive, severe), isoform CRA_c [Homo sapiens] | 0.0 |
| pfu_aug2.0_282.1_07299.t1 | gi|695164192|ref|XP_009510476.1| | PREDICTED: harmonin, partial [Phalacrocorax carbo] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_282.1_07299.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_282.1_07299.t1 atgtacgataggataggatgtacatgtaggatagaaatggttagaattgaggtggataggataggatgggataggatagg ttccatggaactgaaacgattggttgatgacctaaaagttgttctagatgaaccaaacaaattggagatatttgagtata tcagacctctgattcccccaaagcaccaagtagactatgacaaaatggccccagctcctccagggagaaaactacgatct gtaacactacgtcgtcatggtaacgaaagctttggatttgccgtaaggggaggctttgagcatggtattgggatatttgt gtcccaggtagaccccggcagtcaggcagaagctaaaggtctaaaagttggtgatgagatagtgagagtgaatggattta ctatagcagaagccatacatgatgaggtactaaatctgatcaagggacggcaggagatagaactcaaagtaacaaacatt ggaatgttgccaattaagagtgagagggcttcagatcctgtcacatggtcctatgtagacaaagatactaaaactaatgt gagaaaaggacaagagatgggtgtaacacataagaaatcagcagcagatgaagtaaagctttttgtcaatttaaggagtg ccgcttccctaggatgcagtattttaagtggtccccgacacttcccaggaatatttgtagagagagtaaacccaggaagt ctgggagaggagatagggattcaagtaggcgatcagttcatagatgtcaacggaactagttttatggacataactcacag agaagctgtggttgctttgaagagtagtaaggagcttaacattgttatacggaaaggaactggattgccactagtacaga aatctggtgatgtccctccacagtccagctctacaataaaccaccctgcagaggtccacgcccctccctccacctcaccc caggggaatcaaaggtatgactcggcatcagaggagtctgaagatgaaagtacaatcgtcatggagatggacaaatag |
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Protein
| Protein ID | pfu_aug2.0_282.1_07299.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_282.1_07299.t1 MYDRIGCTCRIEMVRIEVDRIGWDRIGSMELKRLVDDLKVVLDEPNKLEIFEYIRPLIPPKHQVDYDKMAPAPPGRKLRS VTLRRHGNESFGFAVRGGFEHGIGIFVSQVDPGSQAEAKGLKVGDEIVRVNGFTIAEAIHDEVLNLIKGRQEIELKVTNI GMLPIKSERASDPVTWSYVDKDTKTNVRKGQEMGVTHKKSAADEVKLFVNLRSAASLGCSILSGPRHFPGIFVERVNPGS LGEEIGIQVGDQFIDVNGTSFMDITHREAVVALKSSKELNIVIRKGTGLPLVQKSGDVPPQSSSTINHPAEVHAPPSTSP QGNQRYDSASEESEDESTIVMEMDK |
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