Gene
| Gene Model ID | pfu_aug2.0_2830.1_02265 |
|---|---|
| Locus | scaffold2830.1 : 38255 ... 58995 : - |
| To GenomeBrowser | scaffold2830.1:38255..58995 |
| Genes list of scaffold | scaffold2830.1 |
| Synonym | pfu_aug1.0_8764.1_45929 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2830.1_02265.t1 | 3 | 1 | LRR_8 | 63 | 100 | 1.6e-09 | 37.3 | 0.00065 | 1.4 | 8.7 |
| pfu_aug2.0_2830.1_02265.t1 | 4 | 1 | LRR_4 | 64 | 95 | 3.2e-11 | 42.5 | 0.00013 | 0.27 | 10.8 |
| pfu_aug2.0_2830.1_02265.t1 | 4 | 2 | LRR_4 | 84 | 124 | 3.2e-11 | 42.5 | 1.6e-08 | 3.4e-05 | 23.3 |
| pfu_aug2.0_2830.1_02265.t1 | 3 | 2 | LRR_8 | 105 | 121 | 1.6e-09 | 37.3 | 0.0034 | 7.3 | 6.4 |
| pfu_aug2.0_2830.1_02265.t1 | 3 | 3 | LRR_8 | 132 | 191 | 1.6e-09 | 37.3 | 3.0e-09 | 6.4e-06 | 25.8 |
| pfu_aug2.0_2830.1_02265.t1 | 4 | 3 | LRR_4 | 153 | 194 | 3.2e-11 | 42.5 | 4.8e-09 | 1.0e-05 | 25.0 |
| pfu_aug2.0_2830.1_02265.t1 | 4 | 4 | LRR_4 | 684 | 692 | 3.2e-11 | 42.5 | 1.5 | 3100.0 | -2.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2830.1_02265.t1 | gi|524869541|ref|XP_005091563.1| | PREDICTED: leucine-rich repeat-containing protein 43-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_2830.1_02265.t1 | gi|676428265|ref|XP_009045218.1| | hypothetical protein LOTGIDRAFT_237548 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_2830.1_02265.t1 | gi|585671600|ref|XP_006818075.1| | PREDICTED: leucine-rich repeat-containing protein 43-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_2830.1_02265.t1 | gi|390345550|ref|XP_789973.3| | PREDICTED: leucine-rich repeat-containing protein 43 [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_2830.1_02265.t1 | gi|260800246|ref|XP_002595045.1| | hypothetical protein BRAFLDRAFT_125356 [Branchiostoma floridae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2830.1_02265.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2830.1_02265.t1 atgactataagtttagaatagtatggtccccagcatgaaaagacagaaacccttgaggagtatgtaggatccaaacattc tccatggcatcttgactatagctggtcatcagaagctaaaaacctccgagagctggccgtcaaatcaccgtggctcatag atgatcactttgtactcaactactttaaaacactcagaattgtagataaaaatgtaacagaggtggatggagaactttta aagtttcagcagttggaggaacttacactgagtgccaacaaaattatcactgtcaactccaaaaatttacccccaaatct taaggtgctggagctttgtgcaaataaaatcagtgacatatcagcactctgtgtacgtccacctcccataatccacctgg gtctaggatttaataaagtatcatttataggagattatctcactggggacttctggccaaacctgttgtccctggaccta agtcataataacctgagtgatttactggacgtcatcagaaagctggggacgttaccaaagctcagaaacctcatactaca aggaaatccactctcgttaatcccaggctacagaggttatactatagatagcttacggaagttaaacattcttgatgata tcatgatatcggcagacgagagacatcattataaaggcttagctagacgtagagaatttatccttgatgaagccaaagta acattagaagtatcatacattaaaggggtaccgatgcctgaggaactcaagaatccagaggagcaaccagaataccctaa aatagagagaaactattacgtgcaatttatgttcctacaagacacgtcccccaagccggaagtcttacacatcactcagg acgacttctctgggatgtcaaggccaagcactgaggcgtctcacgccacatcagacaagatagagagaaattattacgtg caatttatgttcctacaagacacgtcccccaagccggaagtcttacacatcactcaggacgacttctctgggatgtcaag gccaagcactgaggcgtctcacgccacatcagacaaggctagtcctataattgaagagagggtaccttctatactgagtc aggccacagaaaccattaaaaatgttaacttcactgccgagccagaatttgcctctgctagagaacccacaggtaagctg accacgagagacccccagatgaagttccaccgtccaccacccctaaaactncaggctagtcctataattgaagagagggt accttctatactgagtcaggccacagaaaccgttaaaaatgttaacttcactgccgagccagaatttgcctctgctagag aacccacagctgaccacgagagacccccagatgaagttccaccgtccaccacccctaaaactgaggacggcttgaccaga ggtcagtctactgaacctaccactgtgactatcgttgtggaaccggtcaaatcaggggcaggtaactgggcagaggagat cgagattaactggtcacaagtcgtggtcagggatgaccttctccagctcaggaatttcttcaaaaaaggaatggacattg cagtgatggaagaaatggtattactgacacctaatgaggatggctcagagcctaacacccccacaggtaaaagtaaagga aaggacggcaaagacaagaaaaaagacgacaaaaaagaggagaaaaaagatgataaggcgaaagcaggaggaaaagatga caaaaaaggaggtaagaagaagaaggagcctgaggtagagatgaagagaagcgagcctacgtacacgacactggcacggt ggcatataccgctagaggagttcctagagggagagtatatcttcaagtctgtgttccagactgacggcgtggaggtggct tctactgtcaggagtgctgatatcaggaaggacagagataagaagaaacctggatcctccaaacccaaagatctgaaagg tggaaaaggaagtgcaggtaaatggttcagttctcattataacagcactattttatggttaaaatggaatcctattatta actaa |
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Protein
| Protein ID | pfu_aug2.0_2830.1_02265.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2830.1_02265.t1 MTISLEXYGPQHEKTETLEEYVGSKHSPWHLDYSWSSEAKNLRELAVKSPWLIDDHFVLNYFKTLRIVDKNVTEVDGELL KFQQLEELTLSANKIITVNSKNLPPNLKVLELCANKISDISALCVRPPPIIHLGLGFNKVSFIGDYLTGDFWPNLLSLDL SHNNLSDLLDVIRKLGTLPKLRNLILQGNPLSLIPGYRGYTIDSLRKLNILDDIMISADERHHYKGLARRREFILDEAKV TLEVSYIKGVPMPEELKNPEEQPEYPKIERNYYVQFMFLQDTSPKPEVLHITQDDFSGMSRPSTEASHATSDKIERNYYV QFMFLQDTSPKPEVLHITQDDFSGMSRPSTEASHATSDKASPIIEERVPSILSQATETIKNVNFTAEPEFASAREPTGKL TTRDPQMKFHRPPPLKXQASPIIEERVPSILSQATETVKNVNFTAEPEFASAREPTADHERPPDEVPPSTTPKTEDGLTR GQSTEPTTVTIVVEPVKSGAGNWAEEIEINWSQVVVRDDLLQLRNFFKKGMDIAVMEEMVLLTPNEDGSEPNTPTGKSKG KDGKDKKKDDKKEEKKDDKAKAGGKDDKKGGKKKKEPEVEMKRSEPTYTTLARWHIPLEEFLEGEYIFKSVFQTDGVEVA STVRSADIRKDRDKKKPGSSKPKDLKGGKGSAGKWFSSHYNSTILWLKWNPIIN |
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