Gene
| Gene Model ID | pfu_aug2.0_2839.1_32321 |
|---|---|
| Locus | scaffold2839.1 : 28938 ... 57105 : - |
| To GenomeBrowser | scaffold2839.1:28938..57105 |
| Genes list of scaffold | scaffold2839.1 |
| Synonym | pfu_aug1.0_1314.1_00685 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2839.1_32321.t1 | 1 | 1 | C2 | 56 | 136 | 3.7e-10 | 39.5 | 1.7e-13 | 8.6e-10 | 38.3 |
| pfu_aug2.0_2839.1_32321.t1 | 4 | 1 | WW | 291 | 320 | 0.0 | 159.5 | 1.8e-16 | 9.1e-13 | 47.8 |
| pfu_aug2.0_2839.1_32321.t1 | 4 | 2 | WW | 323 | 352 | 0.0 | 159.5 | 5.9e-16 | 2.9e-12 | 46.1 |
| pfu_aug2.0_2839.1_32321.t1 | 4 | 3 | WW | 397 | 426 | 0.0 | 159.5 | 1.7e-16 | 8.6e-13 | 47.8 |
| pfu_aug2.0_2839.1_32321.t1 | 4 | 4 | WW | 437 | 466 | 0.0 | 159.5 | 4.7e-11 | 2.3e-07 | 30.5 |
| pfu_aug2.0_2839.1_32321.t1 | 1 | 1 | HECT | 547 | 848 | 0.0 | 317.0 | 0.0 | 0.0 | 316.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2839.1_32321.t1 | gi|524897667|ref|XP_005105292.1| | PREDICTED: E3 ubiquitin-protein ligase Su(dx)-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_2839.1_32321.t1 | gi|591371909|ref|XP_007052979.1| | PREDICTED: NEDD4-like E3 ubiquitin-protein ligase WWP1 [Chelonia mydas] | 0.0 |
| pfu_aug2.0_2839.1_32321.t1 | gi|504178155|ref|XP_004598166.1| | PREDICTED: NEDD4-like E3 ubiquitin-protein ligase WWP1 [Ochotona princeps] | 0.0 |
| pfu_aug2.0_2839.1_32321.t1 | gi|514733234|ref|XP_005016791.1| | PREDICTED: NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [Anas platyrhynchos] | 0.0 |
| pfu_aug2.0_2839.1_32321.t1 | gi|514733237|ref|XP_005016792.1| | PREDICTED: NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X2 [Anas platyrhynchos] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2839.1_32321.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2839.1_32321.t1 atgtacgatacacatgccatagttgacaacataatgggagaagctgcttctgctgcaacaagtagtgcacagtactcaca attgcaagtaacaagtaagtctagtagtgagcagtactcacaattacaagtaacaagtaagtcaagtagtgcacagtact cacaattacaagtaacaatatgttctgctaagataacagcctctggtggtgccttctctaaacctgatccatttatagaa gtcagtgcagacggacagccggccagaaaaacagacacacagaagaaaactaccacaccaaaatgggatgaggatttcac attattggttacaccatactctaagatagatatacgagtactgagtcaaaacacaatacgagctccttcactactcggac aggccacggtagagttacatggaatacttctggaaaaccatggcaaattaaaagatcacacacggaatgtggagattaag ttggaagggaaaggtaaaacgggagaagtcaagctggtcatgacaggaatggaggtcaatatgaccagattccccaaaaa gaacgtcagtcgtaactcacagtcacaggccaatggtcagcttccaagcaaccagtccacacggggatccaacaggacac gtcgtagtccagcccctcctgttccccctccccctgccacaaacagaggagcaccggctgccagtgctgcagcatcaagt tcgtcaggcggaacagaagctcccacaacaacgcccacttcacaacagaacggtaacgttgccacggcaacatcaggagc ttcaggggagaacactcctgctggtaaccccacacaggaacaacagaatcagtcccagaacacagaacctctccctgctg gatgggagatgaggacagatgcccagggaaggtcttattatgtagatcataacacacgaactaccacatgggagagacca caacctttaccagctggctgggagaggagagtggatccccggggacgtgtctactatgtagatcataacacacgcaccac cacctggcagcgacccagtactgatatggttaataactggcaggaatggcgaaacagcaacagaaatatagccttagagc atttacagaacagatttttattccctaatcctgccgtggcacaacaggacaacgatccattaggtcctctaccagacggc tgggagaagaggatagatcctaacggtagagtttactttgtaaatcacaaaaacagaaccacacaatgggaagatcccag aactcaaggatctgtacaggaagacccattaccagaaggttgggaaatgaggtacacctcagagggcgtacggtactttg tagatcataatacacgatcgaccacattccaagatcccagaggagggcagtccaaaggacccaaaggagcgtttggtgtg cctatacaatacgaaaggagtttccgctggaagttaggacaattccgatatctattgtccagagacaatctctttgaaga ttccttccagcaaataatgcgccttcagccttttgatctcaggagaaggttgtttatcatatttaaaggagaggaggggc tggattatggaggtgtggccagagaatggtttttccacttgtcccacgatgtcttaaacccgatgtactgcttgtttgag tatgcaagccaaaataactactgtctccagataaaccctgcatccagtgttaatccagaccatttagtctactttagatt cataggaaggtttatagccatggctttataccatgggaagtttattgatagcggttttactttacctttctacaaacgaa tgctgaacaaaaaactgtacctcaaagacatagagacgatcgatccagagttttataattcccttgtttggatacaagat aatgaaatagaagaatgtggtttagagctttacttctcggctgactttgagattttgggtaaagtagaagcacataatct gaaggaaggaggagctgatataaaagtcactgatgaaaataaagaggaatatatcaacttaatgacaaactggaggtttt ctcgaggagtagaagatcaagctaaagctttcctggacggcttcagtgaagtcgtaccgttacaatggctgcagtatttt gatgaaagggagcttgagttgatgttatgtggaatgcaagagatggatgtagatgattgggagagaaacacgatttacag gcattatcagaggaacagtaaacaagtcacatggttctggaagtttgtgagggagatagacaatgaaaagaagattcgac ttctacagtttgttactggcacatgtcgattaccagtcggtggttttgccgagttaatggggagcaacggtccacaaaga ttttgtatagagaaagttggcaaggagacttggctaccacgtagtcatacctgctttaatcgattagatttacccccgta ccgtagttacgaacaattagtggaaaaactaacaatggccatagaggaaacggagggcttcggacaggaatga |
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Protein
| Protein ID | pfu_aug2.0_2839.1_32321.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2839.1_32321.t1 MYDTHAIVDNIMGEAASAATSSAQYSQLQVTSKSSSEQYSQLQVTSKSSSAQYSQLQVTICSAKITASGGAFSKPDPFIE VSADGQPARKTDTQKKTTTPKWDEDFTLLVTPYSKIDIRVLSQNTIRAPSLLGQATVELHGILLENHGKLKDHTRNVEIK LEGKGKTGEVKLVMTGMEVNMTRFPKKNVSRNSQSQANGQLPSNQSTRGSNRTRRSPAPPVPPPPATNRGAPAASAAASS SSGGTEAPTTTPTSQQNGNVATATSGASGENTPAGNPTQEQQNQSQNTEPLPAGWEMRTDAQGRSYYVDHNTRTTTWERP QPLPAGWERRVDPRGRVYYVDHNTRTTTWQRPSTDMVNNWQEWRNSNRNIALEHLQNRFLFPNPAVAQQDNDPLGPLPDG WEKRIDPNGRVYFVNHKNRTTQWEDPRTQGSVQEDPLPEGWEMRYTSEGVRYFVDHNTRSTTFQDPRGGQSKGPKGAFGV PIQYERSFRWKLGQFRYLLSRDNLFEDSFQQIMRLQPFDLRRRLFIIFKGEEGLDYGGVAREWFFHLSHDVLNPMYCLFE YASQNNYCLQINPASSVNPDHLVYFRFIGRFIAMALYHGKFIDSGFTLPFYKRMLNKKLYLKDIETIDPEFYNSLVWIQD NEIEECGLELYFSADFEILGKVEAHNLKEGGADIKVTDENKEEYINLMTNWRFSRGVEDQAKAFLDGFSEVVPLQWLQYF DERELELMLCGMQEMDVDDWERNTIYRHYQRNSKQVTWFWKFVREIDNEKKIRLLQFVTGTCRLPVGGFAELMGSNGPQR FCIEKVGKETWLPRSHTCFNRLDLPPYRSYEQLVEKLTMAIEETEGFGQE |
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