Gene
| Gene Model ID | pfu_aug2.0_2855.1_18944 |
|---|---|
| Locus | scaffold2855.1 : 36526 ... 41833 : + |
| To GenomeBrowser | scaffold2855.1:36526..41833 |
| Genes list of scaffold | scaffold2855.1 |
| Synonym | pfu_aug1.0_8827.1_60508 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2855.1_18944.t1 | 3 | 1 | zf-C3HC4_2 | 30 | 44 | 2.0e-08 | 34.1 | 2.6 | 2000.0 | -1.1 |
| pfu_aug2.0_2855.1_18944.t1 | 2 | 1 | zf-C3HC4 | 30 | 43 | 2.3e-07 | 30.3 | 1.2 | 900.0 | -0.4 |
| pfu_aug2.0_2855.1_18944.t1 | 2 | 1 | zf-RING_5 | 30 | 45 | 1.9e-06 | 27.5 | 0.98 | 730.0 | 0.0 |
| pfu_aug2.0_2855.1_18944.t1 | 2 | 1 | zf-RING_2 | 38 | 44 | 1.1e-12 | 47.5 | 3.2 | 2400.0 | -1.6 |
| pfu_aug2.0_2855.1_18944.t1 | 2 | 1 | zf-C3HC4_3 | 39 | 43 | 8.6e-06 | 25.3 | 9.9 | 7300.0 | -3.3 |
| pfu_aug2.0_2855.1_18944.t1 | 3 | 2 | zf-C3HC4_2 | 95 | 104 | 2.0e-08 | 34.1 | 6.8 | 5100.0 | -2.4 |
| pfu_aug2.0_2855.1_18944.t1 | 1 | 1 | zf-rbx1 | 120 | 168 | 1.6e-06 | 28.0 | 2.7e-09 | 2.0e-06 | 27.8 |
| pfu_aug2.0_2855.1_18944.t1 | 2 | 2 | zf-C3HC4_3 | 122 | 169 | 8.6e-06 | 25.3 | 1.2e-08 | 8.6e-06 | 25.3 |
| pfu_aug2.0_2855.1_18944.t1 | 2 | 2 | zf-RING_2 | 124 | 168 | 1.1e-12 | 47.5 | 1.5e-15 | 1.1e-12 | 47.5 |
| pfu_aug2.0_2855.1_18944.t1 | 2 | 2 | zf-RING_5 | 124 | 169 | 1.9e-06 | 27.5 | 2.5e-09 | 1.9e-06 | 27.5 |
| pfu_aug2.0_2855.1_18944.t1 | 3 | 3 | zf-C3HC4_2 | 125 | 167 | 2.0e-08 | 34.1 | 2.7e-11 | 2.0e-08 | 34.1 |
| pfu_aug2.0_2855.1_18944.t1 | 2 | 2 | zf-C3HC4 | 125 | 167 | 2.3e-07 | 30.3 | 3.1e-10 | 2.3e-07 | 30.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2855.1_18944.t1 | gi|470126499|ref|XP_004299221.1| | PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Fragaria vesca subsp. vesca] | 1.0e-08 |
| pfu_aug2.0_2855.1_18944.t1 | gi|596202066|ref|XP_007223707.1| | hypothetical protein PRUPE_ppa013029mg [Prunus persica] | 2.0e-08 |
| pfu_aug2.0_2855.1_18944.t1 | gi|645230365|ref|XP_008221903.1| | PREDICTED: RING-H2 finger protein ATL47 [Prunus mume] | 2.0e-08 |
| pfu_aug2.0_2855.1_18944.t1 | gi|551488387|ref|XP_005795768.1| | PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Xiphophorus maculatus] | 4.0e-08 |
| pfu_aug2.0_2855.1_18944.t1 | gi|677967516|ref|XP_009069763.1| | PREDICTED: E3 ubiquitin-protein ligase RNF126, partial [Acanthisitta chloris] | 5.0e-08 |
Transcript
| Transcript ID | pfu_aug2.0_2855.1_18944.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2855.1_18944.t1 atgcctacttgtgcacaaggatccaaatgcgtgttctggagcctcgctttggtgacactggtctcgtcatcactctatac cacaatatgtgttatcaacattacaggtaccgagtccagcatgtgtccggtgtttgagatgtccacgatagtgtttgtga tagcctttgtcctggtcatgttctggtactgttttaacctacaggcaaagtcaataggtagaccatccaactttgttgtc gatccaaacctactgtcaccagatacttccggtaatgtccgctacacatgcgcatcgccgctactgaagagtgagcacat ggaccatacattccagacggtaaaacccgaggacttaccagaggattttgaatgttctatatgtagcgaaggcagagaag taaagcagcaagtggtacaactcaattgtaaccatctattccacaaaccttgcatcatgaaatggtttttatccaatcag catcggacctgcccggtgtgccggtcctgtcaacttccggcgagcagattattggttataacgattctacctcaaaacgt cagccaatcccagaggccctacagaatatcacagctgtag |
|
Protein
| Protein ID | pfu_aug2.0_2855.1_18944.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2855.1_18944.t1 MPTCAQGSKCVFWSLALVTLVSSSLYTTICVINITGTESSMCPVFEMSTIVFVIAFVLVMFWYCFNLQAKSIGRPSNFVV DPNLLSPDTSGNVRYTCASPLLKSEHMDHTFQTVKPEDLPEDFECSICSEGREVKQQVVQLNCNHLFHKPCIMKWFLSNQ HRTCPVCRSCQLPASRLLVITILPQNVSQSQRPYRISQL |
|