Gene
| Gene Model ID | pfu_aug2.0_2856.1_22210 |
|---|---|
| Locus | scaffold2856.1 : 52373 ... 72635 : - |
| To GenomeBrowser | scaffold2856.1:52373..72635 |
| Genes list of scaffold | scaffold2856.1 |
| Synonym | pfu_aug1.0_10005.1_02846 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2856.1_22210.t1 | 2 | 1 | Ig_2 | 32 | 105 | 2.2e-09 | 37.2 | 2.3e-06 | 0.0048 | 16.9 |
| pfu_aug2.0_2856.1_22210.t1 | 3 | 1 | Ldl_recept_a | 124 | 158 | 5.4e-20 | 71.0 | 3.2e-09 | 6.7e-06 | 25.9 |
| pfu_aug2.0_2856.1_22210.t1 | 2 | 2 | Ig_2 | 177 | 250 | 2.2e-09 | 37.2 | 2.3e-06 | 0.0048 | 16.9 |
| pfu_aug2.0_2856.1_22210.t1 | 3 | 2 | Ldl_recept_a | 269 | 303 | 5.4e-20 | 71.0 | 3.2e-09 | 6.7e-06 | 25.9 |
| pfu_aug2.0_2856.1_22210.t1 | 3 | 3 | Ldl_recept_a | 316 | 350 | 5.4e-20 | 71.0 | 1.0e-10 | 2.1e-07 | 30.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2856.1_22210.t1 | gi|524908503|ref|XP_005109347.1| | PREDICTED: dentin sialophosphoprotein-like [Aplysia californica] | 4.0e-37 |
| pfu_aug2.0_2856.1_22210.t1 | gi|260827072|ref|XP_002608489.1| | hypothetical protein BRAFLDRAFT_128034 [Branchiostoma floridae] | 9.0e-13 |
| pfu_aug2.0_2856.1_22210.t1 | gi|634854849|ref|XP_007941444.1| | PREDICTED: low-density lipoprotein receptor class A domain-containing protein 3 isoform X2 [Orycteropus afer afer] | 4.0e-11 |
| pfu_aug2.0_2856.1_22210.t1 | gi|426368013|ref|XP_004051012.1| | PREDICTED: low-density lipoprotein receptor class A domain-containing protein 3 [Gorilla gorilla gorilla] | 5.0e-11 |
| pfu_aug2.0_2856.1_22210.t1 | gi|488509505|ref|XP_004446886.1| | 9.0e-11 |
Transcript
| Transcript ID | pfu_aug2.0_2856.1_22210.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2856.1_22210.t1 atgatttataaatatataaacctactatatgcatatatcatacaccttgctgttggtaataatttgaattccctgatatc tatcgttccatcacatcccatctatgcttctgagggggacaaattagaggtaaaatgtatcgtgaacaaacgcatctcat cctcagaaaacctgtactggaaagccgttggaagggtcaaaggtcgtatcaagcagaagtggctagatggacatactgta cagatggttttcccatccatacatccaacagatgctggtgtctaccagtgtgtatataatgccagcaaggagcagcattc ccgaggggtctttataaaagtcttcctgaaacgaaagaacaaagacgaagtatgtaagacatccgagtttttatgtccta agagtcagatgtgtataccgttagttctgaggtgtgactcgttccaggactgcttcgagtcggaggatgaacaatgtgaa tacccaaagggtaataatttgaattccctgatatctatcgttccatcacatcccatctatgcttctgagggggacaagtt agaggtaaaatgtatagtgaacaaacgcatctcatcctcagaaaacctgtactggaaagctgtgggaagggtcaaaggtc gtatcaagcagaagtggttagatggacatactgtacagatggttttcccatccatacatcctacagatgctggtgtctac cagtgtgtatataatgccagcaaggagcagcattcccgaggggtctttataaaagtcttccttaaacgaaagaacaaaga cgaagtatgtaagacatcagagtttttatgtcctaagagccagatgtgtataccgttagttctgaggtgtgactcgttcc aggactgctttgagtcggaggatgaacaatgtgaatacccaaagggtaaacccacattaccaatgggttgtagactaggt cagttccgatgtcagaatggtgattgtatagacagtagtctacaatgtgacagccatcaccataacgactgtggcgactg gtcagatgaatattgtcttctaatccaggaacctgtgtttgatgcttccaattataagaacactacagaaatggcagaca agtctgatggggaggatgctgcacacctgacctggctcagaaccacagtttatgctgtcattggttgtaccgtcagtgtg gttctcaccatctcgctcattgttatagcagtatttagagtaagaatgaaacagtctgtttacagacatacagaaagagc tctgcgaagacgcaacatttctaatagaaaccgctacagtgcaagattatctgaaaatgatccgtttctaaattacactc ctggtaacattatagtgaatgttaacaacggagtacagtttatacctggtagtgagtttacctctcttgttggaaggcct ccgtcatattctgagattgataatgacggtaatcgtcaacatgaatctccgcctccctcgtacagcactatagatagaaa tccgatcagagggcctattaactttgatgactatatcatccaacaatcttctctcacagctgcctgtgccacttgtttac ctactctgtctagagactcctccatcatttctgactcagagtcatacattcagtttcagttgggtccaatgccacaaatg caaaatgcttctgtgcagacatccaacacaggggcaacaaattcaccgcagcacgtttccagtgcttgtacagatactcc tccccctgtaagacagccggttctaacggtacagcagggtcagatcatactgtctggatacgccgtcgaaaatcaaaata tttccatgtctgaaaattcgagtcaagtcagtcctgcccatctcagggtagagagaggccaaataattctcacaaatgat cccacctctgttccacctgatatacatttagatcatacagtacaagggaatgaagaaattctaaggccggaagaaaaccc atcacagttaggagaccaagaaagctcaataatccttgttaatacatctaatagtattccagtttctaattcgcaaacgc agttagagaataacgaatctccgttgtcatgtttaccattaaggtcagatgctgaatgtacaagaacagcaactcctgat gatattgagaccagccatgtaaataatgatgtgagtgcttcacctcagaattccagtaatataagtaatatagggcacaa aaatgacaattcagacaatgttgatagaaatagtgtcaaccctgatgaaaccactttatctggtgaaacggatacaaacc agttggagtatgataatcaacctattattagtacaggaggttgtgatgacgagtctccaggtatgataaatcagtcggac aatcagacagatgaacatacagaccaacatgatgttacatgtattggtgcggaggctgaagatagccaaaatgagatgac caaaggtcacggtgttattgacattcaaaatggcattcttgttgttaagtga |
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Protein
| Protein ID | pfu_aug2.0_2856.1_22210.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2856.1_22210.t1 MIYKYINLLYAYIIHLAVGNNLNSLISIVPSHPIYASEGDKLEVKCIVNKRISSSENLYWKAVGRVKGRIKQKWLDGHTV QMVFPSIHPTDAGVYQCVYNASKEQHSRGVFIKVFLKRKNKDEVCKTSEFLCPKSQMCIPLVLRCDSFQDCFESEDEQCE YPKGNNLNSLISIVPSHPIYASEGDKLEVKCIVNKRISSSENLYWKAVGRVKGRIKQKWLDGHTVQMVFPSIHPTDAGVY QCVYNASKEQHSRGVFIKVFLKRKNKDEVCKTSEFLCPKSQMCIPLVLRCDSFQDCFESEDEQCEYPKGKPTLPMGCRLG QFRCQNGDCIDSSLQCDSHHHNDCGDWSDEYCLLIQEPVFDASNYKNTTEMADKSDGEDAAHLTWLRTTVYAVIGCTVSV VLTISLIVIAVFRVRMKQSVYRHTERALRRRNISNRNRYSARLSENDPFLNYTPGNIIVNVNNGVQFIPGSEFTSLVGRP PSYSEIDNDGNRQHESPPPSYSTIDRNPIRGPINFDDYIIQQSSLTAACATCLPTLSRDSSIISDSESYIQFQLGPMPQM QNASVQTSNTGATNSPQHVSSACTDTPPPVRQPVLTVQQGQIILSGYAVENQNISMSENSSQVSPAHLRVERGQIILTND PTSVPPDIHLDHTVQGNEEILRPEENPSQLGDQESSIILVNTSNSIPVSNSQTQLENNESPLSCLPLRSDAECTRTATPD DIETSHVNNDVSASPQNSSNISNIGHKNDNSDNVDRNSVNPDETTLSGETDTNQLEYDNQPIISTGGCDDESPGMINQSD NQTDEHTDQHDVTCIGAEAEDSQNEMTKGHGVIDIQNGILVVK |
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