Gene
| Gene Model ID | pfu_aug2.0_287.1_23802 |
|---|---|
| Locus | scaffold287.1 : 5514 ... 11475 : - |
| To GenomeBrowser | scaffold287.1:5514..11475 |
| Genes list of scaffold | scaffold287.1 |
| Synonym | pfu_aug1.0_1082.1_07797 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| enzymatic polyprotein endonuclease reverse | GO:0016740 GO:0090304 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_287.1_23802.t1 | 1 | 1 | RVT_1 | 28 | 190 | 2.5e-26 | 92.3 | 2.4e-29 | 7.2e-26 | 90.8 |
| pfu_aug2.0_287.1_23802.t1 | 1 | 1 | rve | 342 | 438 | 3.6e-21 | 75.4 | 3.3e-24 | 9.9e-21 | 74.0 |
| pfu_aug2.0_287.1_23802.t1 | 1 | 1 | Chromo | 689 | 732 | 3.2e-09 | 36.3 | 2.3e-12 | 6.8e-09 | 35.2 |
Transcript
| Transcript ID | pfu_aug2.0_287.1_23802.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_287.1_23802.t1 atgaacagacaactagacgaaatgattgaggcagacattatagaggaatcagactctatgtggcagagtcccgtagtgat ggttaaaaagaagtctggtcaacttcgttttgccgttgactaccgcaaacttaatgctgtaactaagcaattcactttcc ctctacctcgtcttgaagatgtttttgactctctaggcaccaatcatgcttcgattttctcaactttagatctagcatcc ggattttggcaagttcctatggacccggaaactgcccataagtcggcctttgtaacgccaacaggtgtctaccaatggaa aagaatgccatttggtctagtgaatgcacctgccagctttcaatctttaatgactcgcattcttcgtggtcttcattgga aatcttgtcttgtttatgtcgatgatatcctcgtattttcggcttcttttgaagaacatttgaaacatttggatgacata tttactcgactcagagaggctggcttaacactgaagccctccaaatgctgctttgcacaaaaacgggttcattacctagg tcacattatcaccaaagatggtgtacaagttgatgtttcaaaaacagaggcgatgaaatctttcccggttcctaaaagtg tcaatgacgttagatcattcttgggcctatgtaattactaccggaagtttgtgaaaggatatagcaagataacagttcca ttaaacaagcttctcaacaaagatgaaaaattcatttggtcagaggaatgccaaaaagcattcgatgaactgaaaaggtc tctcatatctcccccggttctggcttatcctgaccctgacaaagaattcatactaacaactgacgcatcaaacacagcaa ttggttatttcctagctcaacaaggcgaccgaaaacgtgaacatgccattgcttacggaggtcgtactctcaacaaacat gagcgcaattactctgtctcagagaaagaagggctagctattattgaaggtccaataacaacatctactgaaggttacaa gtatattttgctcatagtagactcctttagtaagtggcctgaagcgatacccttgaaaactcaggaagctaaagaaatag caacagctttgtatgctcagatcttctctagatacggcgcgcctcgtgtcatagttagtgaccgtggccaaaactttttg agtaaaatagtgacagcagtttgtgagatttttcaagtcacaagacactacaccagcgcatatcatccacagacaaacgc cacgtgcgagcgaatgaatagtaccatcgctcagtgcctacgagcatacattaatgataagcaaaccaactggccagatc ttttgccaggggtgatgatggctttgcgcatgagcccatcaacccagtcatcagacatgtctcccttccatctgctcttc ggcaaagaaatgaatttgccattcgatacatccctcatcccaaaggaaggtctgaacagagacgcaaaggtccatgtgga aaatcttctcaagcatctaaaagaagttaggaaacttgcgacagttaatatccagaaagcgcaagagaagcaaaagacac agtacgacaagactgcaaaaccttctactttcagaatcggtcagcaagttcttttgcattctacacgtgtaccaaaaggg atgtcaccaaaacttcataacccttgggatggtcccttcttcattgcatcacaaggaccaaataatacatacaagttgcg gcgtgtatcaaacgacaaagcaatcaaatccccgattcatgcaaaccgactgaagttatacgtctattcaagagtccatc cgcctgacggacaagagacaacgaattcccagacctctcagtctccatctcagtccccatcatcatcacataccgaaagt gaacaaagccattgttccaacaacaggacaaatcatccttcaaatacatgtacctctcaacgaagagtgtcacaatcgcc ttctcctggaagccagtcaagcgcttctcagtcccatcaacaagaatcacagaaccaatactatgacgtcgaaaggttga ttcgatgtaaacatgtcaatggaaagaaatatttccttgtcaaatgggtaggttatagtcaaaagacgtgggaacccgag gaaaatatactgcgatccacagtacatgactttcacagacttcgaaccaatgatggcaaaagtcgtacgctcaacttgag tatcgggacgatacatctacttgtttgtgtcatcgctgcgatctgttccacgtcacctgctctagccaacacgattcaac gtgttaactacggtataatgtttgaaaaacagcatcctctccacttgggacaagaatcctggattcacacttttgaaatc cccttaccgaaaatgtcaatggaactcggaaatctacaatgcaccgatagaaaatgccaggttgctaaacatctactcca aagtatcaacgctttgcgaacccagacagttaccaaagtaaataccactctgcatgacatcaggcgactcatacctcgat ctgtcctaccacctgaagagaattacgtaggacattcacgtgtaagaaggggtttgttcgatttcatcggaaaaatttct aaatcgttgtttggtactgctacctcggatgacatcaacactatgaagcggcatatgcaagtgttaaacaggaacaacgc taaacttgcgaaagctatggctatacaagatgaacatctatcttcatttatttccactgttgatgaacgctttggtaaca ttatgcaagctgttcaaaagaatcacaaagaagcaattgcgatagctgagagtgccagacattcaatcgatgcggtcgaa cacgaattccttatccttgaggaaatcatgttgaaacaaacttcattcaaccatgtacattactctgaaagttcctatct caccaatgtctcagccgcttga |
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Protein
| Protein ID | pfu_aug2.0_287.1_23802.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_287.1_23802.t1 MNRQLDEMIEADIIEESDSMWQSPVVMVKKKSGQLRFAVDYRKLNAVTKQFTFPLPRLEDVFDSLGTNHASIFSTLDLAS GFWQVPMDPETAHKSAFVTPTGVYQWKRMPFGLVNAPASFQSLMTRILRGLHWKSCLVYVDDILVFSASFEEHLKHLDDI FTRLREAGLTLKPSKCCFAQKRVHYLGHIITKDGVQVDVSKTEAMKSFPVPKSVNDVRSFLGLCNYYRKFVKGYSKITVP LNKLLNKDEKFIWSEECQKAFDELKRSLISPPVLAYPDPDKEFILTTDASNTAIGYFLAQQGDRKREHAIAYGGRTLNKH ERNYSVSEKEGLAIIEGPITTSTEGYKYILLIVDSFSKWPEAIPLKTQEAKEIATALYAQIFSRYGAPRVIVSDRGQNFL SKIVTAVCEIFQVTRHYTSAYHPQTNATCERMNSTIAQCLRAYINDKQTNWPDLLPGVMMALRMSPSTQSSDMSPFHLLF GKEMNLPFDTSLIPKEGLNRDAKVHVENLLKHLKEVRKLATVNIQKAQEKQKTQYDKTAKPSTFRIGQQVLLHSTRVPKG MSPKLHNPWDGPFFIASQGPNNTYKLRRVSNDKAIKSPIHANRLKLYVYSRVHPPDGQETTNSQTSQSPSQSPSSSHTES EQSHCSNNRTNHPSNTCTSQRRVSQSPSPGSQSSASQSHQQESQNQYYDVERLIRCKHVNGKKYFLVKWVGYSQKTWEPE ENILRSTVHDFHRLRTNDGKSRTLNLSIGTIHLLVCVIAAICSTSPALANTIQRVNYGIMFEKQHPLHLGQESWIHTFEI PLPKMSMELGNLQCTDRKCQVAKHLLQSINALRTQTVTKVNTTLHDIRRLIPRSVLPPEENYVGHSRVRRGLFDFIGKIS KSLFGTATSDDINTMKRHMQVLNRNNAKLAKAMAIQDEHLSSFISTVDERFGNIMQAVQKNHKEAIAIAESARHSIDAVE HEFLILEEIMLKQTSFNHVHYSESSYLTNVSAA |
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