Gene
Gene Model ID | pfu_aug2.0_287.1_23803 |
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Locus | scaffold287.1 : 15116 ... 16118 : + |
To GenomeBrowser | scaffold287.1:15116..16118 |
Genes list of scaffold | scaffold287.1 |
Synonym | pfu_aug1.0_8342.1_45842 |
Manual annotation
Annotation by Blast2GO
Annotation | GO |
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homeobox protein six4 | GO:0003700 GO:0005634 GO:0005737 GO:0008582 GO:0008584 GO:0030238 GO:0030910 GO:0032880 GO:0042472 GO:0043524 GO:0043565 GO:0045214 GO:0045892 GO:0045944 GO:0048538 GO:0048699 GO:0048701 GO:0050678 GO:0051451 GO:0060037 GO:0061055 GO:0061197 GO:0061551 GO:0072075 GO:0072095 GO:0072107 GO:0090190 GO:0098528 GO:1902725 |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_287.1_23803.t1 | 1 | 1 | Homeobox | 196 | 245 | 1.8e-15 | 56.2 | 1.5e-18 | 4.5e-15 | 55.0 |
pfu_aug2.0_287.1_23803.t1 | 1 | 1 | Homeobox_KN | 211 | 243 | 2.9e-09 | 36.4 | 2.2e-12 | 6.6e-09 | 35.3 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_287.1_23803.t1 | gi|676451686|ref|XP_009052787.1| | hypothetical protein LOTGIDRAFT_115798 [Lottia gigantea] | 0.0 |
pfu_aug2.0_287.1_23803.t1 | gi|524902917|ref|XP_005107679.1| | PREDICTED: protein sine oculis-like isoform X1 [Aplysia californica] | 0.0 |
pfu_aug2.0_287.1_23803.t1 | gi|291231307|ref|XP_002735606.1| | PREDICTED: homeobox protein SIX4-like [Saccoglossus kowalevskii] | 0.0 |
pfu_aug2.0_287.1_23803.t1 | gi|295798062|emb|CBL87028.1| | six4 protein [Tribolium castaneum] | 0.0 |
pfu_aug2.0_287.1_23803.t1 | gi|642917868|ref|XP_008191364.1| | PREDICTED: homeobox protein SIX1 [Tribolium castaneum] | 0.0 |
Transcript
Transcript ID | pfu_aug2.0_287.1_23803.t1 |
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Definition | - |
>pfu_aug2.0_287.1_23803.t1 atgatggatacgggttcgaatgccaacccgagcgtcatggcggtggagacgggacctaattgtgtgtctgaaattagttc tactcctactgaggacttattaaatatggacgaaattaagaaaaatcccgacgaaggaaattcgctcaacaacgaaaata ttccaaatccggagtctccatcatcgaattcagaaattacaaacggcaaaagtatgacattttcgcctgagcatgtcgcg tgcgtctgcgaggctcttcaacagaaaggcgacatcgagcgactggcgagattcttgtggtcgctgccccctagcgaact actacgaggaagcgaagcggtgctcaaagcgcgtgccactgtggcattccatcgtgggagctatagggaactttatgcaa ttctagaaagtcataaattcgacgaatccaatcatacgtttctccagaatctttggtacaaggcacattataacgaggcg caaaagatccgaggaagaccgctaggagccgtcgataaataccgactgcgccggaagtacccgttaccgaaaacgatttg ggacggagaagaaacgatatattgcttcaaagaaaaatcgagacagtcactgaaagagtgttataagaataacagatatc cgacaccggacgaaaaaagaaacctggccaaaaagactggactgaccttaacacaggtcagtaactggttcaagaaccga cggcagcgggataggacgccacatcaaaatcctctcaatccgagcatgtcagggtaa |
Protein
Protein ID | pfu_aug2.0_287.1_23803.t1 |
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Definition | - |
>pfu_aug2.0_287.1_23803.t1 MMDTGSNANPSVMAVETGPNCVSEISSTPTEDLLNMDEIKKNPDEGNSLNNENIPNPESPSSNSEITNGKSMTFSPEHVA CVCEALQQKGDIERLARFLWSLPPSELLRGSEAVLKARATVAFHRGSYRELYAILESHKFDESNHTFLQNLWYKAHYNEA QKIRGRPLGAVDKYRLRRKYPLPKTIWDGEETIYCFKEKSRQSLKECYKNNRYPTPDEKRNLAKKTGLTLTQVSNWFKNR RQRDRTPHQNPLNPSMSG |