Gene
| Gene Model ID | pfu_aug2.0_287.1_23806 |
|---|---|
| Locus | scaffold287.1 : 93177 ... 115065 : - |
| To GenomeBrowser | scaffold287.1:93177..115065 |
| Genes list of scaffold | scaffold287.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| synaptonemal complex protein 1 | GO:0000795 GO:0006259 GO:0007129 GO:0022607 GO:0044710 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_287.1_23806.t1 | 1 | 1 | SCP-1 | 63 | 146 | 8.4e-10 | 37.1 | 2.3e-13 | 8.4e-10 | 37.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_287.1_23806.t1 | gi|524907166|ref|XP_005108708.1| | PREDICTED: synaptonemal complex protein 1-like [Aplysia californica] | 8.0e-11 |
| pfu_aug2.0_287.1_23806.t1 | gi|449679611|ref|XP_004209375.1| | 5.0e-10 | |
| pfu_aug2.0_287.1_23806.t1 | gi|585692805|ref|XP_006821519.1| | PREDICTED: synaptonemal complex protein 1-like [Saccoglossus kowalevskii] | 9.0e-09 |
| pfu_aug2.0_287.1_23806.t1 | gi|617656017|ref|XP_007535643.1| | PREDICTED: synaptonemal complex protein 1 isoform X2 [Erinaceus europaeus] | 4.0e-08 |
| pfu_aug2.0_287.1_23806.t1 | gi|617656014|ref|XP_007535642.1| | PREDICTED: synaptonemal complex protein 1 isoform X1 [Erinaceus europaeus] | 4.0e-08 |
Transcript
| Transcript ID | pfu_aug2.0_287.1_23806.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_287.1_23806.t1 atgcactcatctcattatccttcgaagcagcattctgtgttcaaattagtatccaacaaagagacagcaagttcttcaaa cagaaaatttgagttttcaccaactcagaggaaaacaattgacaatgaaaacaagcagatgagtaaaagtagagaaacag atcaccaacataaatttggacaaaagttggagtcagagcgactgtcatcccttcatgaaaatttgcacaaagaagcagat aaaataaggaaatggaaagccaatactgaactggaaataaagcaaaaggatagaaaaatccatgaatgtgcaacaaccat agaatctcttagaaagtcattactggagttgcaggaccttttgagtaagttcaagagcttagaagttgctggcattaagg aacaagaagatttacttgatcacttaacgaaagaaagggaaaagaatgtgttatctgagagaacttggacagaaaaattg gtggaagctgagctaaaggcagatgttggcacattagagaagaaagtgaaagaagttagtgagcaccatatgataaaagt cgcatcagaaaaggcacttcaggaagaattggaaagcctcagaaaagcgagggaagctgatttaaaggtgtttaatgagg aagtggatatgctcaagaaaataattacagatgacaagcagaggttgttttga |
|
Protein
| Protein ID | pfu_aug2.0_287.1_23806.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_287.1_23806.t1 MHSSHYPSKQHSVFKLVSNKETASSSNRKFEFSPTQRKTIDNENKQMSKSRETDHQHKFGQKLESERLSSLHENLHKEAD KIRKWKANTELEIKQKDRKIHECATTIESLRKSLLELQDLLSKFKSLEVAGIKEQEDLLDHLTKEREKNVLSERTWTEKL VEAELKADVGTLEKKVKEVSEHHMIKVASEKALQEELESLRKAREADLKVFNEEVDMLKKIITDDKQRLF |
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