Gene
| Gene Model ID | pfu_aug2.0_2876.1_22218 |
|---|---|
| Locus | scaffold2876.1 : 2365 ... 8582 : + |
| To GenomeBrowser | scaffold2876.1:2365..8582 |
| Genes list of scaffold | scaffold2876.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| u6 snrna-associated sm-like protein lsm6 | GO:0005634 GO:0006396 GO:0044822 GO:0070062 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2876.1_22218.t1 | 1 | 1 | LSM | 9 | 73 | 4.5e-18 | 64.5 | 7.0e-22 | 5.2e-18 | 64.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2876.1_22218.t1 | gi|675855214|ref|XP_009013167.1| | hypothetical protein HELRODRAFT_156575 [Helobdella robusta] | 0.0 |
| pfu_aug2.0_2876.1_22218.t1 | gi|291225628|ref|XP_002732802.1| | PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_2876.1_22218.t1 | gi|198429171|ref|XP_002120650.1| | PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Ciona intestinalis] | 0.0 |
| pfu_aug2.0_2876.1_22218.t1 | gi|700437585|ref|XP_009957909.1| | PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Leptosomus discolor] | 0.0 |
| pfu_aug2.0_2876.1_22218.t1 | gi|695143799|ref|XP_009499204.1| | PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Phalacrocorax carbo] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2876.1_22218.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2876.1_22218.t1 atgagtagaaaacagacaccaagtgaatttttaaaacagattattggccgtcctgtcgtggtgaaactcaattcaggagt ggattacagaggtgtactagcatgtctagatggttacatgaacatagcattagagcagacagaggagtatgtaaatggtc aactcaaaaataaatatggcgatgccttcatcagaggaaacaatgttctgtacatcagtactcagaagagaaggatttag |
|
Protein
| Protein ID | pfu_aug2.0_2876.1_22218.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2876.1_22218.t1 MSRKQTPSEFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRRI |
|