Gene
| Gene Model ID | pfu_aug2.0_2889.1_32334 |
|---|---|
| Locus | scaffold2889.1 : 10916 ... 12402 : + |
| To GenomeBrowser | scaffold2889.1:10916..12402 |
| Genes list of scaffold | scaffold2889.1 |
| Synonym | pfu_aug1.0_43.1_57941 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2889.1_32334.t1 | 2 | 1 | RVT_1 | 13 | 115 | 2.1e-10 | 40.3 | 5.4e-05 | 0.13 | 11.5 |
| pfu_aug2.0_2889.1_32334.t1 | 2 | 2 | RVT_1 | 131 | 262 | 2.1e-10 | 40.3 | 2.7e-09 | 6.8e-06 | 25.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2889.1_32334.t1 | gi|637329852|ref|XP_008114451.1| | PREDICTED: uncharacterized protein LOC103279723 [Anolis carolinensis] | 2.0e-13 |
| pfu_aug2.0_2889.1_32334.t1 | gi|390360291|ref|XP_003729673.1| | 3.0e-12 | |
| pfu_aug2.0_2889.1_32334.t1 | gi|390366168|ref|XP_003730979.1| | PREDICTED: uncharacterized protein LOC100894121 [Strongylocentrotus purpuratus] | 3.0e-11 |
Transcript
| Transcript ID | pfu_aug2.0_2889.1_32334.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2889.1_32334.t1 atgggtgttgattgtttaaacatcgaatcactagagtgtccgtcaaattctctactcattagttatgatgttacatctat gtacacaaacatgacctttgatgaacttttgtcagctgtaagaaaagcgatcaccgagtgtgatctaggaagttatgtaa acatcccgataccagacacagacgatattatattccttctgaaatacgtacttgaaaataacatatttgaattcaatggc aaatattacaaacaaacaattggcgctgcgatgggcgctgtgccatccccagaaatatgtgatattagaatgtatgaaat tacaaaagaaatattaaaccaatacgaacatagaaataaaatagtttttcacggtcgngggtgtccgtcagattctctac tcattagttatgatgttacatctatgtacacaaacatgacctttgatgaacttttgtcagctgtaagaaaagcgatcacc gagtgtgatctaggaagttttgtaaacaccccgataccagacacagacgatattatattccttctgaaatgcgtacttga aaataacatatttgaattcaatggcaaatattacaaacaaacaattggcgctgcgatgggtgctgtgctatccccagaaa tatgtgatattagaatgtatgaaataacaaaagaaatattaaaccaatacgaacatagaaataaaatagtttttcacggt cgattccgtgatgatggattcataatttctaacgggtcgttagaagaagcaactcgcttctttgaaataggaaaccacgt gcatccctaa |
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Protein
| Protein ID | pfu_aug2.0_2889.1_32334.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2889.1_32334.t1 MGVDCLNIESLECPSNSLLISYDVTSMYTNMTFDELLSAVRKAITECDLGSYVNIPIPDTDDIIFLLKYVLENNIFEFNG KYYKQTIGAAMGAVPSPEICDIRMYEITKEILNQYEHRNKIVFHGXGCPSDSLLISYDVTSMYTNMTFDELLSAVRKAIT ECDLGSFVNTPIPDTDDIIFLLKCVLENNIFEFNGKYYKQTIGAAMGAVLSPEICDIRMYEITKEILNQYEHRNKIVFHG RFRDDGFIISNGSLEEATRFFEIGNHVHP |
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