Gene
| Gene Model ID | pfu_aug2.0_289.1_30563 |
|---|---|
| Locus | scaffold289.1 : 1223 ... 37605 : - |
| To GenomeBrowser | scaffold289.1:1223..37605 |
| Genes list of scaffold | scaffold289.1 |
| Synonym | pfu_aug1.0_16523.1_54310 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_289.1_30563.t1 | 3 | 1 | RIO1 | 129 | 210 | 0.0 | 161.6 | 8.3e-35 | 3.1e-31 | 108.2 |
| pfu_aug2.0_289.1_30563.t1 | 3 | 2 | RIO1 | 218 | 266 | 0.0 | 161.6 | 5.9e-19 | 2.2e-15 | 56.5 |
| pfu_aug2.0_289.1_30563.t1 | 3 | 3 | RIO1 | 432 | 451 | 0.0 | 161.6 | 1.5 | 5600.0 | -3.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_289.1_30563.t1 | gi|12805377|gb|AAH02158.1| | Riok1 protein [Mus musculus] | 0.0 |
| pfu_aug2.0_289.1_30563.t1 | gi|640817889|ref|XP_008065796.1| | PREDICTED: serine/threonine-protein kinase RIO1 isoform X1 [Tarsius syrichta] | 0.0 |
| pfu_aug2.0_289.1_30563.t1 | gi|640817891|ref|XP_008065798.1| | PREDICTED: serine/threonine-protein kinase RIO1 isoform X2 [Tarsius syrichta] | 0.0 |
| pfu_aug2.0_289.1_30563.t1 | gi|557027667|ref|XP_006013905.1| | PREDICTED: serine/threonine-protein kinase RIO1-like [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_289.1_30563.t1 | gi|568982052|ref|XP_006516844.1| | PREDICTED: serine/threonine-protein kinase RIO1 isoform X1 [Mus musculus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_289.1_30563.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_289.1_30563.t1 atgaaagttctaacggtggataagagggaaaagaagtcgaaagagagagaagatgctgaaatcagagatgaaggtgtata tgttggagaagactggatggatgaagatgatgaagatgatgatgatgatgattatgataggtatgactggcatggacaga caggggacttcaccaagaaactgtacgctgtcacgtctaatactccccagcccaatgccaatgtatctcagagtaaagga aagagagtgacaacattccagccatcggagaagatgatgggcaaattctatgataaaattaatgttgaaaaatatgaggg tccaatgttacctagcagtgcaaaatcagcactactgaccgcaggaaggaagatggacgtagacaggccagcacctttac ttaaagatgcggagatttcagagtctaaagcccgggagttgtaccttcagattatagaaatgatgagaacactatatcat caatgtaaacttatacacgctgaccttagtgaatttaacttattataccatgagggaaaagcttatgtgatagatgtgtc acagtcagtggaacatgaccatcccagtgcactcgagtttctcagaaaagactgtactaatattacagaagaagtatttg ttgattttagataccatgagggaaaagcctatgtgatagatgtgtcacagtcagtggaacatgaccatcctagtgcactc gagttcctcagaaaagactgtactaatattacagagtttttcaagaaaaagggtgtaagcacattaacagtaaaagagct gtttgactttgttactgatgtaacgataacagaagataacattgatgcatacctagaccatgctatgaccatgacatccc atcgtaccgtagacgatatcacagaacaacagaaagtcgacgaagaggttttcaagcattcttttattccccggactctt gatgatgtcactcactttgaacatgatgtaaaactggcaaaacaaggtgattctgagcaggtactgtaccaaactgtgac aggtatgaaggcagatctgagtggagcccagcaggtactgtaccaaactgtgacaggtatgaaggcagatctgagtggag cccagcagaaaccatctttgctaatggacgcaggggtagatgagaatgaggaagactcagctgatgaagatgacagtgaa gggaattctgggacagagtcagaaggggaggagaggcatggccccgatcctggcagaccgagggatgaatcaccaaacag taaaaaggagaggaagaagcttgttaaggaacaacaaagagaaaaaagaaagactaaagtgccaaaacatgtaaaaaaga ggaaagaaaaattagcaaaatctgtaaaaaaagcagaatag |
|
Protein
| Protein ID | pfu_aug2.0_289.1_30563.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_289.1_30563.t1 MKVLTVDKREKKSKEREDAEIRDEGVYVGEDWMDEDDEDDDDDDYDRYDWHGQTGDFTKKLYAVTSNTPQPNANVSQSKG KRVTTFQPSEKMMGKFYDKINVEKYEGPMLPSSAKSALLTAGRKMDVDRPAPLLKDAEISESKARELYLQIIEMMRTLYH QCKLIHADLSEFNLLYHEGKAYVIDVSQSVEHDHPSALEFLRKDCTNITEEVFVDFRYHEGKAYVIDVSQSVEHDHPSAL EFLRKDCTNITEFFKKKGVSTLTVKELFDFVTDVTITEDNIDAYLDHAMTMTSHRTVDDITEQQKVDEEVFKHSFIPRTL DDVTHFEHDVKLAKQGDSEQVLYQTVTGMKADLSGAQQVLYQTVTGMKADLSGAQQKPSLLMDAGVDENEEDSADEDDSE GNSGTESEGEERHGPDPGRPRDESPNSKKERKKLVKEQQREKRKTKVPKHVKKRKEKLAKSVKKAE |
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