Gene
| Gene Model ID | pfu_aug2.0_290.1_00559 |
|---|---|
| Locus | scaffold290.1 : 353534 ... 363106 : - |
| To GenomeBrowser | scaffold290.1:353534..363106 |
| Genes list of scaffold | scaffold290.1 |
| Synonym | pfu_aug1.0_91699.1_56801 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| double-stranded rna-specific adenosine deaminase isoform x2 | GO:0002376 GO:0044238 GO:0044260 GO:0044707 GO:0044763 GO:0044767 GO:0048519 GO:0050794 GO:0050896 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_290.1_00559.t1 | 3 | 1 | dsrm | 13 | 77 | 9.99995e-41 | 138.1 | 4.6e-18 | 1.7e-14 | 54.1 |
| pfu_aug2.0_290.1_00559.t1 | 3 | 2 | dsrm | 110 | 175 | 9.99995e-41 | 138.1 | 3.8e-13 | 1.4e-09 | 38.3 |
| pfu_aug2.0_290.1_00559.t1 | 3 | 3 | dsrm | 210 | 274 | 9.99995e-41 | 138.1 | 3.0e-14 | 1.1e-10 | 41.9 |
| pfu_aug2.0_290.1_00559.t1 | 2 | 1 | A_deamin | 346 | 463 | 0.0 | 163.2 | 2.5e-31 | 9.3e-28 | 97.5 |
| pfu_aug2.0_290.1_00559.t1 | 2 | 2 | A_deamin | 487 | 661 | 0.0 | 163.2 | 1.9e-20 | 7.1e-17 | 61.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_290.1_00559.t1 | gi|395845298|ref|XP_003795378.1| | 0.0 | |
| pfu_aug2.0_290.1_00559.t1 | gi|507567290|ref|XP_004667282.1| | PREDICTED: double-stranded RNA-specific adenosine deaminase isoform X2 [Jaculus jaculus] | 0.0 |
| pfu_aug2.0_290.1_00559.t1 | gi|558153621|ref|XP_006095156.1| | PREDICTED: double-stranded RNA-specific adenosine deaminase isoform X3 [Myotis lucifugus] | 0.0 |
| pfu_aug2.0_290.1_00559.t1 | gi|591386937|ref|XP_007067887.1| | PREDICTED: double-stranded RNA-specific adenosine deaminase [Chelonia mydas] | 0.0 |
| pfu_aug2.0_290.1_00559.t1 | gi|584062616|ref|XP_006775719.1| | PREDICTED: double-stranded RNA-specific adenosine deaminase isoform X2 [Myotis davidii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_290.1_00559.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_290.1_00559.t1 atggaggagtcgattcgacgactggaagtgaatagtattacagccttccatgagtacggtcagaggtttcatatgagtcc ggctctggaggtcatatcccaacagggaccacctcatcatcctatttttactgtggttgcctttctaggagacagggaag tagggagagcaaggggacctaataaaaaagacgcgagggaagctgcggccgaaaatgctctgaagatgcttcatgtttct cagaaatcgaaggggaacggtcagaacctattaccaaataaccctcattcatcatcggatgttttacattataatggtga caaaaaccctgtcagtgtactgtttgagcacgcacaatccatagggaaagaggtgaaatttgaatctcaggacaaaagtg gaccgcagaattgtcccacatttaaaatgaatgtggttctcggtggaaggaggtttccttgcgtagaagctggtaataag aaggagtgcaaaaagttagcagcagtatccgctctcaatattcttacgaaggaggggaaacaactccctgatgtctcatt ttcgaaaacaccactccatagaatgcccagtgagacagctaaaaccctgtatcctgatggcaagaacccggtacagataa tccacgagtacgcacagacttatggtcatgatatggaacttgttataaacgctgcaggaacaatacatagtccaaggttt tcctgtcacgtccgtcttgatgaccgtgaattcacccgtgttaatgccgccaataaacaagaagcgaagtttaaagcttc tgttaatgcattacagacactgaatgaagagggtagataccaaccatgcatgcctaacacaaatggttcctgtgatttag aggcaactcctataacgtttcaagatcgaatcgctattgcaagtcatgatgaatttgaaaagcaaattacgaaaatacca gacaacatctctggtagaaaagttatagctgccatattgctttacaacgaaagcgatgattctctaagagttatcgctct tggatcagggaatcgatgcatcaagggggactctttgagagaaaatggtttggttttgaacgactcgcatgcggaaatta ttgccagacgcggtttaaaaagatacatttgccaaacgctgataaatggaggtggggctggaatatttgagttcaagaag tcgactggactttaccacctgcttcctcacctcagtttacacctgtacatctccacagctccttgcggggatggggctgt attctcacacaatgcttgcagcgatacacatattaatggtggtcatcagccgacctttgacaatgacaagcagggtcaga ttagaaccaaaatggaaaatggtaatcggaaaagtgggagggttgtgcgcacgttatccaggataaccacaccatctgct gtttgcgcggcagatggtagtcgccaactatacaatcatggtcatctgtcgagagctgtctgctgtcgggtggaggccga gagtcgacttcagcttccaatgggatatgaggttagacatccgaggctgggaactttatctgagtcaccagttcaaagga atactgacaaaacacgtgctactagtatcaactggaatgcagcagacagtacggttgaagtgacagacggcactacgggt cttgtctataacaccaacagagcgtggttccagagaagtgacatgaccccagttcgccaaccaaatcggatggtaatgcc tagtttcctcgtccgtcaattatcctccaggctatcaaagaagcaccattttggagatttcaaacgattacacgaatctt ttcgatggcaaggacagcaaagtattacaaacaagacatatctggaggtcaaactgacctctgtggcttaccaacaagct aagaggaatctgtatgattcatttgaacgacagggatatggacgatgggtatcaaagccagtagaattacaacagttcct ttaa |
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Protein
| Protein ID | pfu_aug2.0_290.1_00559.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_290.1_00559.t1 MEESIRRLEVNSITAFHEYGQRFHMSPALEVISQQGPPHHPIFTVVAFLGDREVGRARGPNKKDAREAAAENALKMLHVS QKSKGNGQNLLPNNPHSSSDVLHYNGDKNPVSVLFEHAQSIGKEVKFESQDKSGPQNCPTFKMNVVLGGRRFPCVEAGNK KECKKLAAVSALNILTKEGKQLPDVSFSKTPLHRMPSETAKTLYPDGKNPVQIIHEYAQTYGHDMELVINAAGTIHSPRF SCHVRLDDREFTRVNAANKQEAKFKASVNALQTLNEEGRYQPCMPNTNGSCDLEATPITFQDRIAIASHDEFEKQITKIP DNISGRKVIAAILLYNESDDSLRVIALGSGNRCIKGDSLRENGLVLNDSHAEIIARRGLKRYICQTLINGGGAGIFEFKK STGLYHLLPHLSLHLYISTAPCGDGAVFSHNACSDTHINGGHQPTFDNDKQGQIRTKMENGNRKSGRVVRTLSRITTPSA VCAADGSRQLYNHGHLSRAVCCRVEAESRLQLPMGYEVRHPRLGTLSESPVQRNTDKTRATSINWNAADSTVEVTDGTTG LVYNTNRAWFQRSDMTPVRQPNRMVMPSFLVRQLSSRLSKKHHFGDFKRLHESFRWQGQQSITNKTYLEVKLTSVAYQQA KRNLYDSFERQGYGRWVSKPVELQQFL |
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